Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01680

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01670 and RR42_RS01675 are separated by 169 nucleotidesRR42_RS01675 and RR42_RS01680 are separated by 13 nucleotidesRR42_RS01680 and RR42_RS01685 are separated by 72 nucleotidesRR42_RS01685 and RR42_RS01690 are separated by 97 nucleotides RR42_RS01670: RR42_RS01670 - 23S rRNA methyltransferase, at 380,692 to 381,885 _RS01670 RR42_RS01675: RR42_RS01675 - hypothetical protein, at 382,055 to 382,360 _RS01675 RR42_RS01680: RR42_RS01680 - cytochrome C550, at 382,374 to 383,582 _RS01680 RR42_RS01685: RR42_RS01685 - alpha/beta hydrolase, at 383,655 to 384,299 _RS01685 RR42_RS01690: RR42_RS01690 - ferredoxin, at 384,397 to 384,717 _RS01690 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2at 381.423 kb on - strand, within RR42_RS01670at 381.539 kb on + strand, within RR42_RS01670at 381.539 kb on + strand, within RR42_RS01670at 381.539 kb on + strand, within RR42_RS01670at 381.540 kb on - strand, within RR42_RS01670at 381.540 kb on - strand, within RR42_RS01670at 381.540 kb on - strand, within RR42_RS01670at 381.641 kb on - strand, within RR42_RS01670at 381.821 kb on + strandat 381.957 kb on + strandat 381.957 kb on + strandat 382.039 kb on + strandat 382.057 kb on - strandat 382.057 kb on - strandat 382.376 kb on - strandat 382.376 kb on - strandat 382.376 kb on - strandat 382.403 kb on + strandat 382.600 kb on + strand, within RR42_RS01680at 382.600 kb on + strand, within RR42_RS01680at 382.600 kb on + strand, within RR42_RS01680at 382.601 kb on - strand, within RR42_RS01680at 382.601 kb on - strand, within RR42_RS01680at 382.601 kb on - strand, within RR42_RS01680at 382.648 kb on + strand, within RR42_RS01680at 382.648 kb on + strand, within RR42_RS01680at 382.648 kb on + strand, within RR42_RS01680at 382.648 kb on + strand, within RR42_RS01680at 382.649 kb on - strand, within RR42_RS01680at 382.649 kb on - strand, within RR42_RS01680at 382.649 kb on - strand, within RR42_RS01680at 382.718 kb on - strand, within RR42_RS01680at 382.847 kb on - strand, within RR42_RS01680at 382.900 kb on + strand, within RR42_RS01680at 382.900 kb on + strand, within RR42_RS01680at 382.900 kb on + strand, within RR42_RS01680at 382.901 kb on - strand, within RR42_RS01680at 382.901 kb on - strand, within RR42_RS01680at 382.901 kb on - strand, within RR42_RS01680at 382.939 kb on + strand, within RR42_RS01680at 382.940 kb on - strand, within RR42_RS01680at 382.960 kb on + strand, within RR42_RS01680at 382.960 kb on + strand, within RR42_RS01680at 382.960 kb on + strand, within RR42_RS01680at 382.969 kb on + strand, within RR42_RS01680at 382.970 kb on - strand, within RR42_RS01680at 383.341 kb on + strand, within RR42_RS01680at 383.342 kb on - strand, within RR42_RS01680at 383.573 kb on + strandat 384.275 kb on + strandat 384.276 kb on - strandat 384.280 kb on - strandat 384.280 kb on - strandat 384.280 kb on - strandat 384.287 kb on + strandat 384.488 kb on + strand, within RR42_RS01690at 384.489 kb on - strand, within RR42_RS01690at 384.506 kb on + strand, within RR42_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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381,423 - RR42_RS01670 0.61 +1.3
381,539 + RR42_RS01670 0.71 +1.0
381,539 + RR42_RS01670 0.71 -0.5
381,539 + RR42_RS01670 0.71 +0.4
381,540 - RR42_RS01670 0.71 +1.0
381,540 - RR42_RS01670 0.71 -2.1
381,540 - RR42_RS01670 0.71 +1.4
381,641 - RR42_RS01670 0.79 +0.4
381,821 + +0.3
381,957 + -2.0
381,957 + +0.1
382,039 + +0.2
382,057 - -0.6
382,057 - +0.0
382,376 - -0.4
382,376 - -0.2
382,376 - +0.1
382,403 + +0.2
382,600 + RR42_RS01680 0.19 +2.3
382,600 + RR42_RS01680 0.19 +0.7
382,600 + RR42_RS01680 0.19 +1.8
382,601 - RR42_RS01680 0.19 -0.8
382,601 - RR42_RS01680 0.19 -0.5
382,601 - RR42_RS01680 0.19 +1.0
382,648 + RR42_RS01680 0.23 +1.0
382,648 + RR42_RS01680 0.23 +0.6
382,648 + RR42_RS01680 0.23 +0.2
382,648 + RR42_RS01680 0.23 -0.9
382,649 - RR42_RS01680 0.23 +0.6
382,649 - RR42_RS01680 0.23 +1.0
382,649 - RR42_RS01680 0.23 +0.6
382,718 - RR42_RS01680 0.28 -0.2
382,847 - RR42_RS01680 0.39 +0.1
382,900 + RR42_RS01680 0.44 -0.2
382,900 + RR42_RS01680 0.44 +0.7
382,900 + RR42_RS01680 0.44 -0.4
382,901 - RR42_RS01680 0.44 +1.1
382,901 - RR42_RS01680 0.44 +0.3
382,901 - RR42_RS01680 0.44 -0.3
382,939 + RR42_RS01680 0.47 +1.3
382,940 - RR42_RS01680 0.47 -1.8
382,960 + RR42_RS01680 0.48 +2.3
382,960 + RR42_RS01680 0.48 +1.4
382,960 + RR42_RS01680 0.48 +1.3
382,969 + RR42_RS01680 0.49 +0.6
382,970 - RR42_RS01680 0.49 -0.4
383,341 + RR42_RS01680 0.80 +0.8
383,342 - RR42_RS01680 0.80 -0.5
383,573 + +1.4
384,275 + +0.7
384,276 - -1.1
384,280 - +0.5
384,280 - +0.1
384,280 - +0.1
384,287 + +1.6
384,488 + RR42_RS01690 0.28 +1.0
384,489 - RR42_RS01690 0.29 -0.4
384,506 + RR42_RS01690 0.34 +1.3

Or see this region's nucleotide sequence