Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01630 and RR42_RS01635 are separated by 24 nucleotides RR42_RS01635 and RR42_RS01640 are separated by 26 nucleotides RR42_RS01640 and RR42_RS01645 are separated by 87 nucleotides
RR42_RS01630: RR42_RS01630 - branched-chain amino acid ABC transporter ATP-binding protein, at 371,942 to 372,865
_RS01630
RR42_RS01635: RR42_RS01635 - ABC transporter permease, at 372,890 to 373,804
_RS01635
RR42_RS01640: RR42_RS01640 - ABC transporter permease, at 373,831 to 374,907
_RS01640
RR42_RS01645: RR42_RS01645 - ABC transporter permease, at 374,995 to 376,329
_RS01645
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1
2 at 372.924 kb on + strand at 372.974 kb on + strand at 372.975 kb on - strand at 373.019 kb on + strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.020 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.460 kb on - strand, within RR42_RS01635 at 373.597 kb on + strand, within RR42_RS01635 at 373.664 kb on + strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.665 kb on - strand, within RR42_RS01635 at 373.731 kb on - strand at 373.731 kb on - strand at 373.731 kb on - strand at 373.867 kb on + strand at 373.867 kb on + strand at 373.868 kb on - strand at 373.868 kb on - strand at 373.868 kb on - strand at 374.031 kb on + strand, within RR42_RS01640 at 374.032 kb on - strand, within RR42_RS01640 at 374.105 kb on - strand, within RR42_RS01640 at 374.152 kb on - strand, within RR42_RS01640 at 374.224 kb on + strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.375 kb on - strand, within RR42_RS01640 at 374.570 kb on - strand, within RR42_RS01640 at 374.582 kb on - strand, within RR42_RS01640 at 375.027 kb on - strand at 375.115 kb on + strand at 375.131 kb on - strand, within RR42_RS01645 at 375.172 kb on + strand, within RR42_RS01645 at 375.247 kb on + strand, within RR42_RS01645 at 375.248 kb on - strand, within RR42_RS01645 at 375.274 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.541 kb on + strand, within RR42_RS01645 at 375.547 kb on + strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.563 kb on - strand, within RR42_RS01645 at 375.697 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.844 kb on + strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.845 kb on - strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645 at 375.846 kb on + strand, within RR42_RS01645
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 372,924 + -0.6 372,974 + +0.1 372,975 - +0.8 373,019 + RR42_RS01635 0.14 +0.8 373,020 - RR42_RS01635 0.14 -0.7 373,020 - RR42_RS01635 0.14 -0.2 373,020 - RR42_RS01635 0.14 -1.3 373,020 - RR42_RS01635 0.14 -0.7 373,460 - RR42_RS01635 0.62 -0.4 373,460 - RR42_RS01635 0.62 -0.2 373,597 + RR42_RS01635 0.77 -1.3 373,664 + RR42_RS01635 0.85 -0.2 373,665 - RR42_RS01635 0.85 -1.4 373,665 - RR42_RS01635 0.85 +2.2 373,665 - RR42_RS01635 0.85 -1.3 373,731 - -1.3 373,731 - -0.6 373,731 - -0.2 373,867 + +0.5 373,867 + +1.0 373,868 - +0.4 373,868 - -0.6 373,868 - +0.4 374,031 + RR42_RS01640 0.19 +0.1 374,032 - RR42_RS01640 0.19 -0.2 374,105 - RR42_RS01640 0.25 +0.2 374,152 - RR42_RS01640 0.30 +0.3 374,224 + RR42_RS01640 0.36 -0.3 374,375 - RR42_RS01640 0.51 +1.1 374,375 - RR42_RS01640 0.51 -1.1 374,570 - RR42_RS01640 0.69 -0.9 374,582 - RR42_RS01640 0.70 -0.2 375,027 - +1.5 375,115 + +1.3 375,131 - RR42_RS01645 0.10 -0.1 375,172 + RR42_RS01645 0.13 -0.1 375,247 + RR42_RS01645 0.19 +1.0 375,248 - RR42_RS01645 0.19 -0.2 375,274 + RR42_RS01645 0.21 +0.3 375,541 + RR42_RS01645 0.41 -1.4 375,541 + RR42_RS01645 0.41 +0.7 375,541 + RR42_RS01645 0.41 -0.7 375,547 + RR42_RS01645 0.41 +0.1 375,563 - RR42_RS01645 0.43 +0.4 375,563 - RR42_RS01645 0.43 +2.6 375,697 + RR42_RS01645 0.53 +0.1 375,844 + RR42_RS01645 0.64 +2.6 375,844 + RR42_RS01645 0.64 +1.2 375,844 + RR42_RS01645 0.64 +0.5 375,844 + RR42_RS01645 0.64 -0.5 375,844 + RR42_RS01645 0.64 -0.6 375,845 - RR42_RS01645 0.64 -0.0 375,845 - RR42_RS01645 0.64 -0.5 375,846 + RR42_RS01645 0.64 -0.7 375,846 + RR42_RS01645 0.64 -0.2
Or see this region's nucleotide sequence