Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01170 and RR42_RS01175 are separated by 121 nucleotides RR42_RS01175 and RR42_RS01180 are separated by 100 nucleotides
RR42_RS01170: RR42_RS01170 - LysR family transcriptional regulator, at 268,200 to 269,117
_RS01170
RR42_RS01175: RR42_RS01175 - membrane protein, at 269,239 to 270,183
_RS01175
RR42_RS01180: RR42_RS01180 - acyl-CoA thioesterase, at 270,284 to 271,114
_RS01180
Position (kb) 269
270
271 Strain fitness (log2 ratio) -1
0
1
2
3 at 268.245 kb on - strand at 268.285 kb on + strand at 268.286 kb on - strand at 268.305 kb on + strand, within RR42_RS01170 at 268.306 kb on - strand, within RR42_RS01170 at 268.306 kb on - strand, within RR42_RS01170 at 268.306 kb on - strand, within RR42_RS01170 at 268.306 kb on - strand, within RR42_RS01170 at 268.540 kb on + strand, within RR42_RS01170 at 268.540 kb on + strand, within RR42_RS01170 at 268.541 kb on - strand, within RR42_RS01170 at 268.541 kb on - strand, within RR42_RS01170 at 269.085 kb on + strand at 269.086 kb on - strand at 269.131 kb on + strand at 269.132 kb on - strand at 269.142 kb on - strand at 269.152 kb on + strand at 269.215 kb on + strand at 269.216 kb on - strand at 269.216 kb on - strand at 269.216 kb on - strand at 269.227 kb on + strand at 269.228 kb on - strand at 269.228 kb on - strand at 269.523 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.566 kb on + strand, within RR42_RS01175 at 269.567 kb on - strand, within RR42_RS01175 at 269.596 kb on + strand, within RR42_RS01175 at 269.785 kb on + strand, within RR42_RS01175 at 269.956 kb on - strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.968 kb on + strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.969 kb on - strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.980 kb on + strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 269.981 kb on - strand, within RR42_RS01175 at 270.034 kb on + strand, within RR42_RS01175 at 270.387 kb on - strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.737 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.944 kb on + strand, within RR42_RS01180 at 270.945 kb on - strand, within RR42_RS01180 at 271.103 kb on + strand at 271.103 kb on + strand at 271.103 kb on + strand at 271.103 kb on + strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.104 kb on - strand at 271.112 kb on + strand at 271.112 kb on + strand at 271.112 kb on + strand at 271.113 kb on - strand at 271.113 kb on - strand at 271.113 kb on - strand at 271.171 kb on - strand at 271.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 268,245 - -0.8 268,285 + -0.4 268,286 - -0.1 268,305 + RR42_RS01170 0.11 +0.0 268,306 - RR42_RS01170 0.12 +0.0 268,306 - RR42_RS01170 0.12 +0.3 268,306 - RR42_RS01170 0.12 +1.3 268,306 - RR42_RS01170 0.12 -0.4 268,540 + RR42_RS01170 0.37 -1.3 268,540 + RR42_RS01170 0.37 +1.0 268,541 - RR42_RS01170 0.37 +2.6 268,541 - RR42_RS01170 0.37 -1.1 269,085 + +0.3 269,086 - +0.9 269,131 + +1.0 269,132 - +2.1 269,142 - -0.6 269,152 + -0.4 269,215 + +0.3 269,216 - +0.2 269,216 - +0.8 269,216 - -0.3 269,227 + -0.9 269,228 - -1.0 269,228 - -1.6 269,523 + RR42_RS01175 0.30 +0.9 269,566 + RR42_RS01175 0.35 +1.6 269,566 + RR42_RS01175 0.35 +0.0 269,566 + RR42_RS01175 0.35 +0.3 269,567 - RR42_RS01175 0.35 -0.5 269,596 + RR42_RS01175 0.38 -0.2 269,785 + RR42_RS01175 0.58 +0.5 269,956 - RR42_RS01175 0.76 -0.5 269,968 + RR42_RS01175 0.77 -0.2 269,968 + RR42_RS01175 0.77 -1.1 269,968 + RR42_RS01175 0.77 +0.1 269,968 + RR42_RS01175 0.77 -0.5 269,969 - RR42_RS01175 0.77 -0.4 269,969 - RR42_RS01175 0.77 +1.0 269,969 - RR42_RS01175 0.77 -0.3 269,969 - RR42_RS01175 0.77 +0.6 269,980 + RR42_RS01175 0.78 -0.2 269,980 + RR42_RS01175 0.78 +1.2 269,980 + RR42_RS01175 0.78 +0.6 269,980 + RR42_RS01175 0.78 +1.7 269,981 - RR42_RS01175 0.79 -1.1 269,981 - RR42_RS01175 0.79 +0.3 269,981 - RR42_RS01175 0.79 +0.6 269,981 - RR42_RS01175 0.79 -1.5 270,034 + RR42_RS01175 0.84 +0.0 270,387 - RR42_RS01180 0.12 +0.2 270,737 + RR42_RS01180 0.55 -0.6 270,737 + RR42_RS01180 0.55 +0.4 270,737 + RR42_RS01180 0.55 +3.4 270,944 + RR42_RS01180 0.79 +1.9 270,944 + RR42_RS01180 0.79 +0.5 270,944 + RR42_RS01180 0.79 -0.0 270,944 + RR42_RS01180 0.79 +0.5 270,945 - RR42_RS01180 0.80 +1.6 271,103 + +1.6 271,103 + -0.4 271,103 + -1.2 271,103 + -0.4 271,104 - +1.0 271,104 - +0.6 271,104 - -0.2 271,104 - +0.5 271,104 - +1.0 271,112 + +0.8 271,112 + +0.0 271,112 + +1.0 271,113 - -0.3 271,113 - +0.3 271,113 - -0.6 271,171 - +0.0 271,171 - +0.5
Or see this region's nucleotide sequence