Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01055 and RR42_RS01060 are separated by 242 nucleotides RR42_RS01060 and RR42_RS01065 are separated by 92 nucleotides RR42_RS01065 and RR42_RS01070 are separated by 79 nucleotides RR42_RS01070 and RR42_RS01075 are separated by 294 nucleotides
RR42_RS01055: RR42_RS01055 - ABC transporter substrate-binding protein, at 248,416 to 249,402
_RS01055
RR42_RS01060: RR42_RS01060 - peptidase, at 249,645 to 250,181
_RS01060
RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605
_RS01065
RR42_RS01070: RR42_RS01070 - nuclear export factor GLE1, at 251,685 to 252,197
_RS01070
RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073
_RS01075
Position (kb) 250
251
252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 249.391 kb on + strand at 249.392 kb on - strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.524 kb on + strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.525 kb on - strand at 249.526 kb on + strand at 249.526 kb on + strand at 249.526 kb on + strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.527 kb on - strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.614 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.654 kb on + strand at 249.655 kb on - strand at 249.655 kb on - strand at 249.665 kb on + strand at 249.665 kb on + strand at 249.665 kb on + strand at 249.666 kb on - strand at 249.666 kb on - strand at 249.666 kb on - strand at 249.734 kb on + strand, within RR42_RS01060 at 249.734 kb on + strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.735 kb on - strand, within RR42_RS01060 at 249.774 kb on + strand, within RR42_RS01060 at 249.774 kb on + strand, within RR42_RS01060 at 249.774 kb on + strand, within RR42_RS01060 at 249.775 kb on - strand, within RR42_RS01060 at 249.787 kb on + strand, within RR42_RS01060 at 249.788 kb on - strand, within RR42_RS01060 at 249.788 kb on - strand, within RR42_RS01060 at 249.788 kb on - strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 249.861 kb on + strand, within RR42_RS01060 at 250.044 kb on + strand, within RR42_RS01060 at 250.044 kb on + strand, within RR42_RS01060 at 250.045 kb on - strand, within RR42_RS01060 at 250.080 kb on - strand, within RR42_RS01060 at 250.143 kb on + strand at 250.143 kb on + strand at 250.143 kb on + strand at 250.144 kb on - strand at 250.144 kb on - strand at 250.270 kb on + strand at 250.282 kb on + strand at 250.282 kb on + strand at 250.282 kb on + strand at 250.283 kb on - strand at 250.547 kb on + strand, within RR42_RS01065 at 250.547 kb on + strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 250.548 kb on - strand, within RR42_RS01065 at 251.153 kb on + strand, within RR42_RS01065 at 251.153 kb on + strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.154 kb on - strand, within RR42_RS01065 at 251.336 kb on + strand, within RR42_RS01065 at 251.336 kb on + strand, within RR42_RS01065 at 251.337 kb on - strand, within RR42_RS01065 at 251.337 kb on - strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.459 kb on + strand, within RR42_RS01065 at 251.460 kb on - strand, within RR42_RS01065 at 251.460 kb on - strand, within RR42_RS01065 at 251.543 kb on + strand at 251.543 kb on + strand at 251.544 kb on - strand at 251.594 kb on + strand at 251.594 kb on + strand at 251.603 kb on + strand at 251.603 kb on + strand at 251.833 kb on + strand, within RR42_RS01070 at 251.833 kb on + strand, within RR42_RS01070 at 251.834 kb on - strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.963 kb on - strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.266 kb on - strand at 252.393 kb on - strand at 252.393 kb on - strand at 252.399 kb on + strand at 252.399 kb on + strand at 252.400 kb on - strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.594 kb on + strand, within RR42_RS01075 at 252.595 kb on - strand, within RR42_RS01075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 249,391 + +1.0 249,392 - +0.3 249,524 + -0.3 249,524 + +0.9 249,524 + +0.0 249,524 + +2.0 249,524 + -0.4 249,525 - -0.9 249,525 - +0.3 249,525 - -1.6 249,525 - +0.2 249,525 - -1.8 249,525 - +1.5 249,525 - -2.0 249,525 - +0.6 249,526 + -1.5 249,526 + +0.5 249,526 + +0.2 249,527 - -0.6 249,527 - -1.3 249,527 - -0.2 249,527 - +0.4 249,527 - +0.3 249,614 + -0.2 249,614 + +0.9 249,614 + +0.9 249,614 + +1.6 249,614 + -0.6 249,614 + +0.3 249,654 + -2.6 249,654 + +0.9 249,654 + +0.6 249,654 + +1.4 249,655 - +3.0 249,655 - -0.1 249,665 + +0.0 249,665 + +2.6 249,665 + +0.4 249,666 - +1.3 249,666 - +2.6 249,666 - -1.0 249,734 + RR42_RS01060 0.17 -0.7 249,734 + RR42_RS01060 0.17 +1.0 249,735 - RR42_RS01060 0.17 -0.1 249,735 - RR42_RS01060 0.17 +1.6 249,735 - RR42_RS01060 0.17 -0.3 249,735 - RR42_RS01060 0.17 +1.6 249,735 - RR42_RS01060 0.17 -1.5 249,774 + RR42_RS01060 0.24 -1.3 249,774 + RR42_RS01060 0.24 -1.4 249,774 + RR42_RS01060 0.24 +1.3 249,775 - RR42_RS01060 0.24 -2.8 249,787 + RR42_RS01060 0.26 +0.3 249,788 - RR42_RS01060 0.27 +0.4 249,788 - RR42_RS01060 0.27 -1.0 249,788 - RR42_RS01060 0.27 +0.2 249,861 + RR42_RS01060 0.40 -0.3 249,861 + RR42_RS01060 0.40 -0.5 249,861 + RR42_RS01060 0.40 -1.1 249,861 + RR42_RS01060 0.40 -0.1 250,044 + RR42_RS01060 0.74 -0.3 250,044 + RR42_RS01060 0.74 -0.6 250,045 - RR42_RS01060 0.74 +0.7 250,080 - RR42_RS01060 0.81 -0.4 250,143 + +0.0 250,143 + -1.0 250,143 + -0.3 250,144 - -0.1 250,144 - +2.6 250,270 + +2.9 250,282 + -1.2 250,282 + +1.9 250,282 + -1.5 250,283 - +0.3 250,547 + RR42_RS01065 0.20 -0.2 250,547 + RR42_RS01065 0.20 +0.2 250,548 - RR42_RS01065 0.21 -0.9 250,548 - RR42_RS01065 0.21 -1.1 250,548 - RR42_RS01065 0.21 -0.2 250,548 - RR42_RS01065 0.21 -1.3 251,153 + RR42_RS01065 0.66 +1.4 251,153 + RR42_RS01065 0.66 -0.6 251,154 - RR42_RS01065 0.66 -1.4 251,154 - RR42_RS01065 0.66 +2.6 251,154 - RR42_RS01065 0.66 -0.1 251,336 + RR42_RS01065 0.80 +0.2 251,336 + RR42_RS01065 0.80 -0.5 251,337 - RR42_RS01065 0.80 -2.4 251,337 - RR42_RS01065 0.80 -0.8 251,459 + RR42_RS01065 0.89 -0.8 251,459 + RR42_RS01065 0.89 -1.9 251,459 + RR42_RS01065 0.89 +0.6 251,460 - RR42_RS01065 0.89 -1.2 251,460 - RR42_RS01065 0.89 -1.5 251,543 + -0.9 251,543 + -0.2 251,544 - +0.0 251,594 + +1.0 251,594 + -0.7 251,603 + -0.5 251,603 + +0.7 251,833 + RR42_RS01070 0.29 -0.1 251,833 + RR42_RS01070 0.29 +0.6 251,834 - RR42_RS01070 0.29 +0.9 251,962 + RR42_RS01070 0.54 +2.6 251,962 + RR42_RS01070 0.54 -0.1 251,962 + RR42_RS01070 0.54 -0.5 251,963 - RR42_RS01070 0.54 +0.8 252,115 + RR42_RS01070 0.84 +0.3 252,115 + RR42_RS01070 0.84 -0.2 252,115 + RR42_RS01070 0.84 -0.3 252,266 - +0.2 252,393 - +2.6 252,393 - +0.3 252,399 + -0.8 252,399 + +1.3 252,400 - +0.8 252,403 + -0.4 252,403 + +1.1 252,403 + +0.3 252,403 + -0.4 252,403 + +0.6 252,403 + -0.1 252,403 + +0.9 252,403 + -1.2 252,403 + -1.4 252,404 - -0.4 252,404 - -1.0 252,404 - -2.2 252,404 - -0.0 252,404 - -0.7 252,404 - -2.1 252,404 - -0.4 252,404 - -0.9 252,594 + RR42_RS01075 0.18 -0.4 252,595 - RR42_RS01075 0.18 +0.8
Or see this region's nucleotide sequence