Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00875 and RR42_RS00880 overlap by 4 nucleotides RR42_RS00880 and RR42_RS00885 are separated by 93 nucleotides RR42_RS00885 and RR42_RS00890 are separated by 84 nucleotides RR42_RS00890 and RR42_RS00895 are separated by 48 nucleotides
RR42_RS00875: RR42_RS00875 - isocitrate dehydrogenase, at 211,201 to 213,045
_RS00875
RR42_RS00880: RR42_RS00880 - carbonate dehydratase, at 213,042 to 213,713
_RS00880
RR42_RS00885: RR42_RS00885 - acetyl-CoA acetyltransferase, at 213,807 to 215,003
_RS00885
RR42_RS00890: RR42_RS00890 - short-chain dehydrogenase, at 215,088 to 215,768
_RS00890
RR42_RS00895: RR42_RS00895 - acyl-CoA dehydrogenase, at 215,817 to 216,947
_RS00895
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 212.941 kb on + strand at 212.941 kb on + strand at 212.941 kb on + strand at 212.941 kb on + strand at 213.739 kb on + strand at 213.739 kb on + strand at 213.743 kb on + strand at 213.743 kb on + strand at 213.744 kb on - strand at 213.820 kb on + strand at 213.820 kb on + strand at 214.263 kb on + strand, within RR42_RS00885 at 214.264 kb on - strand, within RR42_RS00885 at 214.264 kb on - strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.338 kb on - strand, within RR42_RS00885 at 215.067 kb on + strand at 215.305 kb on + strand, within RR42_RS00890 at 215.306 kb on - strand, within RR42_RS00890 at 215.306 kb on - strand, within RR42_RS00890 at 215.313 kb on + strand, within RR42_RS00890 at 215.313 kb on + strand, within RR42_RS00890 at 215.313 kb on + strand, within RR42_RS00890 at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.742 kb on + strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.743 kb on - strand at 215.961 kb on + strand, within RR42_RS00895 at 215.985 kb on + strand, within RR42_RS00895
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 212,941 + -1.1 212,941 + -1.1 212,941 + -1.9 212,941 + +0.2 213,739 + -0.7 213,739 + +0.7 213,743 + +1.0 213,743 + -1.5 213,744 - -0.6 213,820 + -0.7 213,820 + +0.7 214,263 + RR42_RS00885 0.38 +0.4 214,264 - RR42_RS00885 0.38 +0.1 214,264 - RR42_RS00885 0.38 -0.3 214,329 + RR42_RS00885 0.44 +0.4 214,329 + RR42_RS00885 0.44 -0.7 214,329 + RR42_RS00885 0.44 -0.3 214,329 + RR42_RS00885 0.44 +0.6 214,329 + RR42_RS00885 0.44 -2.3 214,329 + RR42_RS00885 0.44 -0.2 214,338 - RR42_RS00885 0.44 +0.4 215,067 + -1.9 215,305 + RR42_RS00890 0.32 +0.3 215,306 - RR42_RS00890 0.32 +0.7 215,306 - RR42_RS00890 0.32 -0.3 215,313 + RR42_RS00890 0.33 -1.2 215,313 + RR42_RS00890 0.33 -0.7 215,313 + RR42_RS00890 0.33 -0.7 215,742 + -0.4 215,742 + +0.6 215,742 + -0.4 215,742 + -0.2 215,742 + +0.7 215,742 + +0.8 215,743 - -0.2 215,743 - +0.1 215,743 - -0.1 215,743 - +0.0 215,743 - +0.6 215,961 + RR42_RS00895 0.13 -0.4 215,985 + RR42_RS00895 0.15 +0.0
Or see this region's nucleotide sequence