Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00655

Experiment: R2A with Paraquat dichloride 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00645 and RR42_RS00650 are separated by 95 nucleotidesRR42_RS00650 and RR42_RS00655 are separated by 125 nucleotidesRR42_RS00655 and RR42_RS00660 are separated by 3 nucleotides RR42_RS00645: RR42_RS00645 - allophanate hydrolase, at 167,229 to 168,251 _RS00645 RR42_RS00650: RR42_RS00650 - hypothetical protein, at 168,347 to 169,087 _RS00650 RR42_RS00655: RR42_RS00655 - membrane protein, at 169,213 to 169,950 _RS00655 RR42_RS00660: RR42_RS00660 - permease, at 169,954 to 170,904 _RS00660 Position (kb) 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.282 kb on + strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.282 kb on + strandat 168.283 kb on - strandat 168.581 kb on + strand, within RR42_RS00650at 168.581 kb on + strand, within RR42_RS00650at 168.582 kb on - strand, within RR42_RS00650at 168.596 kb on + strand, within RR42_RS00650at 168.597 kb on - strand, within RR42_RS00650at 168.597 kb on - strand, within RR42_RS00650at 168.597 kb on - strand, within RR42_RS00650at 168.675 kb on - strand, within RR42_RS00650at 168.839 kb on + strand, within RR42_RS00650at 168.839 kb on + strand, within RR42_RS00650at 168.840 kb on - strand, within RR42_RS00650at 168.840 kb on - strand, within RR42_RS00650at 168.840 kb on - strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.965 kb on + strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.966 kb on - strand, within RR42_RS00650at 168.969 kb on + strand, within RR42_RS00650at 169.103 kb on + strandat 169.104 kb on - strandat 169.104 kb on - strandat 169.199 kb on + strandat 169.199 kb on + strandat 169.200 kb on - strandat 169.200 kb on - strandat 169.241 kb on + strandat 169.241 kb on + strandat 169.242 kb on - strandat 169.523 kb on - strand, within RR42_RS00655at 169.599 kb on - strand, within RR42_RS00655at 169.695 kb on + strand, within RR42_RS00655at 169.948 kb on + strandat 169.972 kb on + strandat 169.972 kb on + strandat 169.972 kb on + strandat 169.979 kb on - strandat 169.979 kb on - strandat 170.077 kb on + strand, within RR42_RS00660at 170.077 kb on + strand, within RR42_RS00660at 170.557 kb on + strand, within RR42_RS00660at 170.557 kb on + strand, within RR42_RS00660at 170.557 kb on + strand, within RR42_RS00660at 170.558 kb on - strand, within RR42_RS00660at 170.558 kb on - strand, within RR42_RS00660at 170.559 kb on + strand, within RR42_RS00660at 170.559 kb on + strand, within RR42_RS00660at 170.560 kb on - strand, within RR42_RS00660at 170.573 kb on - strand, within RR42_RS00660at 170.596 kb on + strand, within RR42_RS00660at 170.596 kb on + strand, within RR42_RS00660at 170.596 kb on + strand, within RR42_RS00660at 170.597 kb on - strand, within RR42_RS00660at 170.619 kb on + strand, within RR42_RS00660at 170.878 kb on - strandat 170.878 kb on - strandat 170.890 kb on + strandat 170.890 kb on + strandat 170.903 kb on - strandat 170.903 kb on - strandat 170.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml
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168,282 + -2.6
168,282 + -1.9
168,282 + -0.7
168,282 + +1.1
168,282 + -0.5
168,283 - -1.5
168,581 + RR42_RS00650 0.32 +0.2
168,581 + RR42_RS00650 0.32 -0.3
168,582 - RR42_RS00650 0.32 +0.6
168,596 + RR42_RS00650 0.34 +0.2
168,597 - RR42_RS00650 0.34 -0.0
168,597 - RR42_RS00650 0.34 +0.7
168,597 - RR42_RS00650 0.34 -1.5
168,675 - RR42_RS00650 0.44 -0.2
168,839 + RR42_RS00650 0.66 +0.1
168,839 + RR42_RS00650 0.66 +0.2
168,840 - RR42_RS00650 0.67 -0.3
168,840 - RR42_RS00650 0.67 +1.6
168,840 - RR42_RS00650 0.67 +1.4
168,965 + RR42_RS00650 0.83 +1.1
168,965 + RR42_RS00650 0.83 -0.5
168,965 + RR42_RS00650 0.83 -2.8
168,965 + RR42_RS00650 0.83 +0.6
168,965 + RR42_RS00650 0.83 -1.7
168,965 + RR42_RS00650 0.83 +0.3
168,966 - RR42_RS00650 0.84 +1.1
168,966 - RR42_RS00650 0.84 +0.0
168,966 - RR42_RS00650 0.84 +0.5
168,966 - RR42_RS00650 0.84 +0.8
168,966 - RR42_RS00650 0.84 -0.9
168,966 - RR42_RS00650 0.84 -0.2
168,966 - RR42_RS00650 0.84 -0.7
168,966 - RR42_RS00650 0.84 +1.6
168,966 - RR42_RS00650 0.84 +1.8
168,969 + RR42_RS00650 0.84 -1.7
169,103 + -0.1
169,104 - +1.1
169,104 - -0.6
169,199 + +0.8
169,199 + +0.1
169,200 - +1.4
169,200 - +0.3
169,241 + +1.9
169,241 + +1.6
169,242 - -1.0
169,523 - RR42_RS00655 0.42 -1.7
169,599 - RR42_RS00655 0.52 -2.2
169,695 + RR42_RS00655 0.65 +0.6
169,948 + +0.8
169,972 + +0.6
169,972 + +1.6
169,972 + -0.9
169,979 - -0.6
169,979 - -1.3
170,077 + RR42_RS00660 0.13 -0.4
170,077 + RR42_RS00660 0.13 -0.4
170,557 + RR42_RS00660 0.63 -0.3
170,557 + RR42_RS00660 0.63 +1.1
170,557 + RR42_RS00660 0.63 -0.3
170,558 - RR42_RS00660 0.64 +0.3
170,558 - RR42_RS00660 0.64 -2.1
170,559 + RR42_RS00660 0.64 -1.1
170,559 + RR42_RS00660 0.64 -1.3
170,560 - RR42_RS00660 0.64 -0.6
170,573 - RR42_RS00660 0.65 -0.5
170,596 + RR42_RS00660 0.68 -0.3
170,596 + RR42_RS00660 0.68 +0.8
170,596 + RR42_RS00660 0.68 -0.4
170,597 - RR42_RS00660 0.68 +0.1
170,619 + RR42_RS00660 0.70 -0.2
170,878 - -1.1
170,878 - +0.1
170,890 + -0.9
170,890 + -0.4
170,903 - -0.4
170,903 - -1.0
170,903 - +0.5

Or see this region's nucleotide sequence