Experiment: R2A with Paraquat dichloride 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00245 and RR42_RS00250 are separated by 17 nucleotides RR42_RS00250 and RR42_RS00255 are separated by 271 nucleotides
RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102
_RS00245
RR42_RS00250: RR42_RS00250 - GntR family transcriptional regulator, at 76,120 to 77,166
_RS00250
RR42_RS00255: RR42_RS00255 - ABC transporter permease, at 77,438 to 78,121
_RS00255
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.314 kb on - strand, within RR42_RS00245 at 75.428 kb on + strand, within RR42_RS00245 at 75.768 kb on - strand, within RR42_RS00245 at 75.768 kb on - strand, within RR42_RS00245 at 75.789 kb on - strand, within RR42_RS00245 at 75.896 kb on - strand, within RR42_RS00245 at 75.953 kb on + strand, within RR42_RS00245 at 75.953 kb on + strand, within RR42_RS00245 at 76.100 kb on + strand at 76.101 kb on - strand at 76.130 kb on + strand at 76.130 kb on + strand at 76.131 kb on - strand at 76.131 kb on - strand at 76.199 kb on - strand at 76.461 kb on - strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.666 kb on + strand, within RR42_RS00250 at 76.667 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 76.779 kb on - strand, within RR42_RS00250 at 77.006 kb on - strand, within RR42_RS00250 at 77.069 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.276 kb on + strand at 77.277 kb on - strand at 77.444 kb on + strand at 77.444 kb on + strand at 77.616 kb on - strand, within RR42_RS00255 at 77.739 kb on + strand, within RR42_RS00255 at 77.750 kb on - strand, within RR42_RS00255 at 77.879 kb on + strand, within RR42_RS00255 at 77.880 kb on - strand, within RR42_RS00255 at 77.880 kb on - strand, within RR42_RS00255 at 78.008 kb on + strand, within RR42_RS00255
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.064 mg/ml remove 75,314 - RR42_RS00245 0.47 -0.2 75,428 + RR42_RS00245 0.54 +0.1 75,768 - RR42_RS00245 0.77 -0.4 75,768 - RR42_RS00245 0.77 +2.1 75,789 - RR42_RS00245 0.79 -0.0 75,896 - RR42_RS00245 0.86 -0.7 75,953 + RR42_RS00245 0.90 +0.8 75,953 + RR42_RS00245 0.90 -0.4 76,100 + +1.9 76,101 - +0.2 76,130 + +0.1 76,130 + -1.6 76,131 - -0.1 76,131 - +0.1 76,199 - -0.3 76,461 - RR42_RS00250 0.33 -0.4 76,666 + RR42_RS00250 0.52 +0.5 76,666 + RR42_RS00250 0.52 +0.8 76,667 - RR42_RS00250 0.52 +0.3 76,779 - RR42_RS00250 0.63 +0.8 76,779 - RR42_RS00250 0.63 -2.1 77,006 - RR42_RS00250 0.85 -0.3 77,069 + +0.5 77,276 + +1.1 77,276 + +0.1 77,276 + +0.2 77,276 + -0.1 77,276 + +0.6 77,277 - +0.6 77,444 + -0.3 77,444 + -0.2 77,616 - RR42_RS00255 0.26 -0.2 77,739 + RR42_RS00255 0.44 -0.0 77,750 - RR42_RS00255 0.46 -0.4 77,879 + RR42_RS00255 0.64 -0.1 77,880 - RR42_RS00255 0.65 -0.8 77,880 - RR42_RS00255 0.65 -1.0 78,008 + RR42_RS00255 0.83 -1.9
Or see this region's nucleotide sequence