Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4726 and Psyr_4727 are separated by 70 nucleotides Psyr_4727 and Psyr_4728 are separated by 69 nucleotides Psyr_4728 and Psyr_4729 overlap by 4 nucleotides
Psyr_4726: Psyr_4726 - hypothetical protein, at 5,604,413 to 5,605,573
_4726
Psyr_4727: Psyr_4727 - glutathione S-transferase, putative, at 5,605,644 to 5,606,273
_4727
Psyr_4728: Psyr_4728 - conserved hypothetical protein, at 5,606,343 to 5,606,525
_4728
Psyr_4729: Psyr_4729 - PepSY-associated TM helix, at 5,606,522 to 5,607,655
_4729
Position (kb) 5605
5606
5607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5605.137 kb on + strand, within Psyr_4726 at 5605.269 kb on - strand, within Psyr_4726 at 5605.717 kb on + strand, within Psyr_4727 at 5605.837 kb on + strand, within Psyr_4727 at 5605.837 kb on + strand, within Psyr_4727 at 5605.837 kb on + strand, within Psyr_4727 at 5605.838 kb on - strand, within Psyr_4727 at 5605.838 kb on - strand, within Psyr_4727 at 5605.838 kb on - strand, within Psyr_4727 at 5606.041 kb on + strand, within Psyr_4727 at 5606.042 kb on - strand, within Psyr_4727 at 5606.158 kb on - strand, within Psyr_4727 at 5606.248 kb on + strand at 5606.248 kb on + strand at 5606.248 kb on + strand at 5606.248 kb on + strand at 5606.248 kb on + strand at 5606.249 kb on - strand at 5606.249 kb on - strand at 5606.249 kb on - strand at 5606.277 kb on + strand at 5606.301 kb on + strand at 5606.301 kb on + strand at 5606.301 kb on + strand at 5606.301 kb on + strand at 5606.301 kb on + strand at 5606.302 kb on - strand at 5606.302 kb on - strand at 5606.302 kb on - strand at 5606.302 kb on - strand at 5606.306 kb on + strand at 5606.306 kb on + strand at 5606.307 kb on - strand at 5606.372 kb on + strand, within Psyr_4728 at 5606.589 kb on + strand at 5606.589 kb on + strand at 5606.606 kb on + strand at 5606.709 kb on + strand, within Psyr_4729 at 5606.710 kb on - strand, within Psyr_4729 at 5606.794 kb on + strand, within Psyr_4729 at 5606.794 kb on + strand, within Psyr_4729 at 5606.795 kb on - strand, within Psyr_4729 at 5606.795 kb on - strand, within Psyr_4729 at 5606.795 kb on - strand, within Psyr_4729 at 5606.949 kb on + strand, within Psyr_4729 at 5606.950 kb on - strand, within Psyr_4729 at 5607.062 kb on + strand, within Psyr_4729 at 5607.063 kb on - strand, within Psyr_4729 at 5607.097 kb on + strand, within Psyr_4729 at 5607.109 kb on + strand, within Psyr_4729 at 5607.109 kb on + strand, within Psyr_4729 at 5607.109 kb on + strand, within Psyr_4729 at 5607.110 kb on - strand, within Psyr_4729 at 5607.110 kb on - strand, within Psyr_4729 at 5607.156 kb on + strand, within Psyr_4729 at 5607.156 kb on + strand, within Psyr_4729 at 5607.157 kb on - strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.237 kb on + strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.238 kb on - strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.245 kb on + strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729 at 5607.246 kb on - strand, within Psyr_4729
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,605,137 + Psyr_4726 0.62 -0.7 5,605,269 - Psyr_4726 0.74 +1.1 5,605,717 + Psyr_4727 0.12 +1.3 5,605,837 + Psyr_4727 0.31 -1.9 5,605,837 + Psyr_4727 0.31 -0.2 5,605,837 + Psyr_4727 0.31 +1.7 5,605,838 - Psyr_4727 0.31 -2.1 5,605,838 - Psyr_4727 0.31 -0.1 5,605,838 - Psyr_4727 0.31 -0.9 5,606,041 + Psyr_4727 0.63 -3.2 5,606,042 - Psyr_4727 0.63 -2.4 5,606,158 - Psyr_4727 0.82 +0.5 5,606,248 + -1.0 5,606,248 + +2.1 5,606,248 + -2.3 5,606,248 + -0.0 5,606,248 + -1.3 5,606,249 - -0.3 5,606,249 - +1.8 5,606,249 - +0.3 5,606,277 + +0.6 5,606,301 + +0.1 5,606,301 + +0.7 5,606,301 + +0.1 5,606,301 + -0.2 5,606,301 + +0.1 5,606,302 - +1.7 5,606,302 - -0.7 5,606,302 - -0.0 5,606,302 - -0.2 5,606,306 + +0.8 5,606,306 + -0.3 5,606,307 - -0.1 5,606,372 + Psyr_4728 0.16 +0.1 5,606,589 + -0.5 5,606,589 + +0.8 5,606,606 + -0.2 5,606,709 + Psyr_4729 0.16 +0.1 5,606,710 - Psyr_4729 0.17 +1.4 5,606,794 + Psyr_4729 0.24 +1.2 5,606,794 + Psyr_4729 0.24 +0.5 5,606,795 - Psyr_4729 0.24 +0.1 5,606,795 - Psyr_4729 0.24 -0.5 5,606,795 - Psyr_4729 0.24 -0.5 5,606,949 + Psyr_4729 0.38 +0.3 5,606,950 - Psyr_4729 0.38 +0.2 5,607,062 + Psyr_4729 0.48 -1.5 5,607,063 - Psyr_4729 0.48 +0.2 5,607,097 + Psyr_4729 0.51 -1.6 5,607,109 + Psyr_4729 0.52 -0.7 5,607,109 + Psyr_4729 0.52 +2.1 5,607,109 + Psyr_4729 0.52 -1.2 5,607,110 - Psyr_4729 0.52 +1.1 5,607,110 - Psyr_4729 0.52 +0.8 5,607,156 + Psyr_4729 0.56 +0.6 5,607,156 + Psyr_4729 0.56 +0.8 5,607,157 - Psyr_4729 0.56 +0.9 5,607,237 + Psyr_4729 0.63 +0.1 5,607,237 + Psyr_4729 0.63 +0.9 5,607,237 + Psyr_4729 0.63 +0.6 5,607,237 + Psyr_4729 0.63 +1.1 5,607,237 + Psyr_4729 0.63 +0.7 5,607,237 + Psyr_4729 0.63 -0.3 5,607,238 - Psyr_4729 0.63 -0.9 5,607,238 - Psyr_4729 0.63 +0.5 5,607,238 - Psyr_4729 0.63 +0.3 5,607,238 - Psyr_4729 0.63 -0.5 5,607,238 - Psyr_4729 0.63 +1.5 5,607,245 + Psyr_4729 0.64 -2.4 5,607,245 + Psyr_4729 0.64 +0.7 5,607,245 + Psyr_4729 0.64 -1.7 5,607,245 + Psyr_4729 0.64 -0.5 5,607,245 + Psyr_4729 0.64 -0.3 5,607,246 - Psyr_4729 0.64 -0.2 5,607,246 - Psyr_4729 0.64 -0.3 5,607,246 - Psyr_4729 0.64 -0.2 5,607,246 - Psyr_4729 0.64 +0.8
Or see this region's nucleotide sequence