Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4716

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4715 and Psyr_4716 are separated by 50 nucleotidesPsyr_4716 and Psyr_4717 are separated by 277 nucleotides Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281 _4715 Psyr_4716: Psyr_4716 - Sarcosine oxidase, gamma subunit, heterotetrameric, at 5,589,332 to 5,589,964 _4716 Psyr_4717: Psyr_4717 - formyltetrahydrofolate deformylase, at 5,590,242 to 5,591,099 _4717 Position (kb) 5589 5590Strain fitness (log2 ratio) -2 -1 0 1 2at 5588.332 kb on - strand, within Psyr_4715at 5588.332 kb on - strand, within Psyr_4715at 5588.535 kb on + strand, within Psyr_4715at 5588.535 kb on + strand, within Psyr_4715at 5588.535 kb on + strand, within Psyr_4715at 5588.535 kb on + strand, within Psyr_4715at 5588.536 kb on - strand, within Psyr_4715at 5588.536 kb on - strand, within Psyr_4715at 5588.724 kb on + strand, within Psyr_4715at 5588.793 kb on + strand, within Psyr_4715at 5588.794 kb on - strand, within Psyr_4715at 5588.794 kb on - strand, within Psyr_4715at 5588.794 kb on - strand, within Psyr_4715at 5588.794 kb on - strand, within Psyr_4715at 5589.132 kb on + strandat 5589.133 kb on - strandat 5589.174 kb on - strandat 5589.279 kb on + strandat 5589.280 kb on - strandat 5589.350 kb on + strandat 5589.664 kb on - strand, within Psyr_4716at 5589.756 kb on + strand, within Psyr_4716at 5589.757 kb on - strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.776 kb on + strand, within Psyr_4716at 5589.906 kb on - strandat 5589.941 kb on + strandat 5589.984 kb on + strandat 5589.984 kb on + strandat 5589.985 kb on - strandat 5589.985 kb on - strandat 5590.015 kb on + strandat 5590.015 kb on + strandat 5590.016 kb on - strandat 5590.036 kb on - strandat 5590.193 kb on - strandat 5590.224 kb on + strandat 5590.224 kb on + strandat 5590.241 kb on + strandat 5590.242 kb on - strandat 5590.242 kb on - strandat 5590.242 kb on - strandat 5590.242 kb on - strandat 5590.341 kb on + strand, within Psyr_4717at 5590.341 kb on + strand, within Psyr_4717at 5590.341 kb on + strand, within Psyr_4717at 5590.341 kb on + strand, within Psyr_4717at 5590.341 kb on + strand, within Psyr_4717at 5590.341 kb on + strand, within Psyr_4717at 5590.342 kb on - strand, within Psyr_4717at 5590.342 kb on - strand, within Psyr_4717at 5590.342 kb on - strand, within Psyr_4717at 5590.342 kb on - strand, within Psyr_4717at 5590.516 kb on + strand, within Psyr_4717at 5590.516 kb on + strand, within Psyr_4717at 5590.516 kb on + strand, within Psyr_4717at 5590.517 kb on - strand, within Psyr_4717at 5590.517 kb on - strand, within Psyr_4717at 5590.574 kb on + strand, within Psyr_4717at 5590.655 kb on + strand, within Psyr_4717at 5590.655 kb on + strand, within Psyr_4717at 5590.656 kb on - strand, within Psyr_4717at 5590.656 kb on - strand, within Psyr_4717at 5590.656 kb on - strand, within Psyr_4717at 5590.659 kb on + strand, within Psyr_4717at 5590.659 kb on + strand, within Psyr_4717at 5590.659 kb on + strand, within Psyr_4717at 5590.659 kb on + strand, within Psyr_4717at 5590.659 kb on + strand, within Psyr_4717at 5590.660 kb on - strand, within Psyr_4717at 5590.660 kb on - strand, within Psyr_4717at 5590.660 kb on - strand, within Psyr_4717at 5590.660 kb on - strand, within Psyr_4717at 5590.660 kb on - strand, within Psyr_4717at 5590.660 kb on - strand, within Psyr_4717at 5590.662 kb on + strand, within Psyr_4717at 5590.662 kb on + strand, within Psyr_4717at 5590.662 kb on + strand, within Psyr_4717at 5590.663 kb on - strand, within Psyr_4717at 5590.663 kb on - strand, within Psyr_4717at 5590.761 kb on + strand, within Psyr_4717at 5590.872 kb on + strand, within Psyr_4717at 5590.872 kb on + strand, within Psyr_4717at 5590.873 kb on - strand, within Psyr_4717at 5590.873 kb on - strand, within Psyr_4717at 5590.911 kb on + strand, within Psyr_4717at 5590.911 kb on + strand, within Psyr_4717at 5590.911 kb on + strand, within Psyr_4717at 5590.911 kb on + strand, within Psyr_4717at 5590.912 kb on - strand, within Psyr_4717at 5590.912 kb on - strand, within Psyr_4717

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,588,332 - Psyr_4715 0.69 -0.2
5,588,332 - Psyr_4715 0.69 +0.6
5,588,535 + Psyr_4715 0.75 +0.1
5,588,535 + Psyr_4715 0.75 -0.1
5,588,535 + Psyr_4715 0.75 -0.1
5,588,535 + Psyr_4715 0.75 +1.1
5,588,536 - Psyr_4715 0.75 -0.9
5,588,536 - Psyr_4715 0.75 -0.8
5,588,724 + Psyr_4715 0.82 -0.7
5,588,793 + Psyr_4715 0.84 -0.7
5,588,794 - Psyr_4715 0.84 +1.1
5,588,794 - Psyr_4715 0.84 +1.2
5,588,794 - Psyr_4715 0.84 -0.7
5,588,794 - Psyr_4715 0.84 +0.5
5,589,132 + +1.0
5,589,133 - +0.1
5,589,174 - -1.5
5,589,279 + +0.4
5,589,280 - +0.5
5,589,350 + +0.5
5,589,664 - Psyr_4716 0.52 -1.2
5,589,756 + Psyr_4716 0.67 -0.1
5,589,757 - Psyr_4716 0.67 -1.2
5,589,776 + Psyr_4716 0.70 -1.1
5,589,776 + Psyr_4716 0.70 -0.3
5,589,906 - -0.3
5,589,941 + -0.5
5,589,984 + +0.6
5,589,984 + +0.4
5,589,985 - +0.2
5,589,985 - -0.2
5,590,015 + -0.8
5,590,015 + -0.5
5,590,016 - +0.1
5,590,036 - -0.7
5,590,193 - -0.4
5,590,224 + +0.2
5,590,224 + -0.7
5,590,241 + -0.3
5,590,242 - +0.4
5,590,242 - +0.2
5,590,242 - -0.7
5,590,242 - -0.3
5,590,341 + Psyr_4717 0.12 -0.6
5,590,341 + Psyr_4717 0.12 +0.1
5,590,341 + Psyr_4717 0.12 +2.1
5,590,341 + Psyr_4717 0.12 +0.5
5,590,341 + Psyr_4717 0.12 +0.0
5,590,341 + Psyr_4717 0.12 -0.5
5,590,342 - Psyr_4717 0.12 -0.5
5,590,342 - Psyr_4717 0.12 +0.7
5,590,342 - Psyr_4717 0.12 +0.4
5,590,342 - Psyr_4717 0.12 +0.4
5,590,516 + Psyr_4717 0.32 +0.1
5,590,516 + Psyr_4717 0.32 -1.2
5,590,516 + Psyr_4717 0.32 +0.2
5,590,517 - Psyr_4717 0.32 +0.7
5,590,517 - Psyr_4717 0.32 +0.1
5,590,574 + Psyr_4717 0.39 +0.3
5,590,655 + Psyr_4717 0.48 +1.2
5,590,655 + Psyr_4717 0.48 -0.4
5,590,656 - Psyr_4717 0.48 +0.0
5,590,656 - Psyr_4717 0.48 +1.3
5,590,656 - Psyr_4717 0.48 -0.2
5,590,659 + Psyr_4717 0.49 +0.5
5,590,659 + Psyr_4717 0.49 -1.3
5,590,659 + Psyr_4717 0.49 +0.4
5,590,659 + Psyr_4717 0.49 +0.3
5,590,659 + Psyr_4717 0.49 -2.3
5,590,660 - Psyr_4717 0.49 +0.3
5,590,660 - Psyr_4717 0.49 +0.7
5,590,660 - Psyr_4717 0.49 +0.2
5,590,660 - Psyr_4717 0.49 -0.1
5,590,660 - Psyr_4717 0.49 -0.2
5,590,660 - Psyr_4717 0.49 -0.7
5,590,662 + Psyr_4717 0.49 +0.1
5,590,662 + Psyr_4717 0.49 -1.3
5,590,662 + Psyr_4717 0.49 -0.1
5,590,663 - Psyr_4717 0.49 -0.5
5,590,663 - Psyr_4717 0.49 -0.4
5,590,761 + Psyr_4717 0.60 -1.1
5,590,872 + Psyr_4717 0.73 +0.6
5,590,872 + Psyr_4717 0.73 +0.9
5,590,873 - Psyr_4717 0.74 -1.3
5,590,873 - Psyr_4717 0.74 +1.8
5,590,911 + Psyr_4717 0.78 -1.1
5,590,911 + Psyr_4717 0.78 +0.3
5,590,911 + Psyr_4717 0.78 -0.8
5,590,911 + Psyr_4717 0.78 -0.5
5,590,912 - Psyr_4717 0.78 -0.7
5,590,912 - Psyr_4717 0.78 -0.6

Or see this region's nucleotide sequence