Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4595

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4592 and Psyr_4593 are separated by 130 nucleotidesPsyr_4593 and Psyr_4594 overlap by 4 nucleotidesPsyr_4594 and Psyr_4595 are separated by 60 nucleotidesPsyr_4595 and Psyr_4596 are separated by 18 nucleotidesPsyr_4596 and Psyr_4597 overlap by 4 nucleotidesPsyr_4597 and Psyr_4598 are separated by 45 nucleotides Psyr_4592: Psyr_4592 - Phage tail tape measure protein TP901, core region, at 5,452,336 to 5,454,495 _4592 Psyr_4593: Psyr_4593 - sigma factor domain protein, at 5,454,626 to 5,454,922 _4593 Psyr_4594: Psyr_4594 - conserved hypothetical protein, at 5,454,919 to 5,455,266 _4594 Psyr_4595: Psyr_4595 - Bacteriophage Mu tail sheath, at 5,455,327 to 5,456,823 _4595 Psyr_4596: Psyr_4596 - conserved hypothetical protein, at 5,456,842 to 5,457,030 _4596 Psyr_4597: Psyr_4597 - conserved hypothetical protein, at 5,457,027 to 5,457,617 _4597 Psyr_4598: Psyr_4598 - lipoprotein, putative, at 5,457,663 to 5,458,001 _4598 Position (kb) 5455 5456 5457Strain fitness (log2 ratio) -2 -1 0 1 2at 5454.396 kb on + strandat 5454.397 kb on - strandat 5454.397 kb on - strandat 5454.397 kb on - strandat 5454.484 kb on - strandat 5454.601 kb on + strandat 5454.601 kb on + strandat 5454.602 kb on - strandat 5454.754 kb on - strand, within Psyr_4593at 5454.754 kb on - strand, within Psyr_4593at 5454.754 kb on - strand, within Psyr_4593at 5454.754 kb on - strand, within Psyr_4593at 5454.808 kb on - strand, within Psyr_4593at 5454.845 kb on - strand, within Psyr_4593at 5455.002 kb on - strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.019 kb on + strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.020 kb on - strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.145 kb on + strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.146 kb on - strand, within Psyr_4594at 5455.149 kb on - strand, within Psyr_4594at 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.238 kb on + strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.239 kb on - strandat 5455.273 kb on + strandat 5455.273 kb on + strandat 5455.322 kb on + strandat 5455.328 kb on + strandat 5455.329 kb on - strandat 5455.343 kb on + strandat 5455.344 kb on - strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.394 kb on + strandat 5455.395 kb on - strandat 5455.511 kb on + strand, within Psyr_4595at 5455.608 kb on - strand, within Psyr_4595at 5455.700 kb on + strand, within Psyr_4595at 5455.700 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.715 kb on + strand, within Psyr_4595at 5455.716 kb on - strand, within Psyr_4595at 5455.716 kb on - strand, within Psyr_4595at 5455.746 kb on - strand, within Psyr_4595at 5455.746 kb on - strand, within Psyr_4595at 5455.757 kb on + strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5455.758 kb on - strand, within Psyr_4595at 5456.048 kb on + strand, within Psyr_4595at 5456.048 kb on + strand, within Psyr_4595at 5456.048 kb on + strand, within Psyr_4595at 5456.048 kb on + strand, within Psyr_4595at 5456.049 kb on - strand, within Psyr_4595at 5456.049 kb on - strand, within Psyr_4595at 5456.222 kb on - strand, within Psyr_4595at 5456.465 kb on + strand, within Psyr_4595at 5456.465 kb on + strand, within Psyr_4595at 5456.465 kb on + strand, within Psyr_4595at 5456.465 kb on + strand, within Psyr_4595at 5456.465 kb on + strand, within Psyr_4595at 5456.466 kb on - strand, within Psyr_4595at 5456.466 kb on - strand, within Psyr_4595at 5456.466 kb on - strand, within Psyr_4595at 5456.466 kb on - strand, within Psyr_4595at 5456.466 kb on - strand, within Psyr_4595at 5456.466 kb on - strand, within Psyr_4595at 5456.509 kb on - strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.597 kb on + strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.598 kb on - strand, within Psyr_4595at 5456.844 kb on - strandat 5456.886 kb on + strand, within Psyr_4596at 5456.887 kb on - strand, within Psyr_4596at 5457.010 kb on + strand, within Psyr_4596at 5457.010 kb on + strand, within Psyr_4596at 5457.010 kb on + strand, within Psyr_4596at 5457.010 kb on + strand, within Psyr_4596at 5457.011 kb on - strand, within Psyr_4596at 5457.160 kb on + strand, within Psyr_4597at 5457.160 kb on + strand, within Psyr_4597at 5457.161 kb on - strand, within Psyr_4597at 5457.161 kb on - strand, within Psyr_4597at 5457.161 kb on - strand, within Psyr_4597at 5457.161 kb on - strand, within Psyr_4597at 5457.161 kb on - strand, within Psyr_4597at 5457.238 kb on + strand, within Psyr_4597at 5457.283 kb on + strand, within Psyr_4597at 5457.283 kb on + strand, within Psyr_4597at 5457.283 kb on + strand, within Psyr_4597at 5457.283 kb on + strand, within Psyr_4597at 5457.493 kb on + strand, within Psyr_4597at 5457.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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5,454,396 + +1.0
5,454,397 - -0.0
5,454,397 - +0.4
5,454,397 - -0.6
5,454,484 - +0.0
5,454,601 + -0.6
5,454,601 + -1.2
5,454,602 - -1.0
5,454,754 - Psyr_4593 0.43 -2.2
5,454,754 - Psyr_4593 0.43 +0.9
5,454,754 - Psyr_4593 0.43 +1.3
5,454,754 - Psyr_4593 0.43 +1.5
5,454,808 - Psyr_4593 0.61 +0.0
5,454,845 - Psyr_4593 0.74 -0.8
5,455,002 - Psyr_4594 0.24 -1.4
5,455,019 + Psyr_4594 0.29 +1.0
5,455,019 + Psyr_4594 0.29 -0.7
5,455,019 + Psyr_4594 0.29 +0.0
5,455,019 + Psyr_4594 0.29 -0.1
5,455,019 + Psyr_4594 0.29 -0.6
5,455,019 + Psyr_4594 0.29 +0.8
5,455,020 - Psyr_4594 0.29 +1.1
5,455,020 - Psyr_4594 0.29 +1.5
5,455,020 - Psyr_4594 0.29 -0.7
5,455,020 - Psyr_4594 0.29 +0.1
5,455,020 - Psyr_4594 0.29 +0.0
5,455,145 + Psyr_4594 0.65 +1.0
5,455,145 + Psyr_4594 0.65 +0.5
5,455,145 + Psyr_4594 0.65 +0.8
5,455,145 + Psyr_4594 0.65 -2.2
5,455,145 + Psyr_4594 0.65 +0.8
5,455,145 + Psyr_4594 0.65 -0.2
5,455,145 + Psyr_4594 0.65 +0.2
5,455,145 + Psyr_4594 0.65 -1.0
5,455,145 + Psyr_4594 0.65 +0.9
5,455,145 + Psyr_4594 0.65 -0.9
5,455,146 - Psyr_4594 0.65 -0.5
5,455,146 - Psyr_4594 0.65 -0.2
5,455,146 - Psyr_4594 0.65 +0.1
5,455,146 - Psyr_4594 0.65 +0.6
5,455,146 - Psyr_4594 0.65 -0.4
5,455,146 - Psyr_4594 0.65 -0.4
5,455,149 - Psyr_4594 0.66 +0.1
5,455,238 + -1.3
5,455,238 + -0.6
5,455,238 + +0.3
5,455,238 + +0.6
5,455,238 + +1.3
5,455,239 - +0.4
5,455,239 - -0.2
5,455,239 - -1.8
5,455,239 - -1.5
5,455,239 - -0.7
5,455,273 + -1.2
5,455,273 + +1.1
5,455,322 + +0.0
5,455,328 + +0.6
5,455,329 - +0.7
5,455,343 + +0.1
5,455,344 - +0.4
5,455,394 + -0.8
5,455,394 + +0.5
5,455,394 + +0.4
5,455,394 + +0.5
5,455,394 + +0.2
5,455,394 + +1.8
5,455,395 - +0.2
5,455,511 + Psyr_4595 0.12 -0.4
5,455,608 - Psyr_4595 0.19 -1.7
5,455,700 + Psyr_4595 0.25 -1.8
5,455,700 + Psyr_4595 0.25 +0.9
5,455,715 + Psyr_4595 0.26 -2.0
5,455,715 + Psyr_4595 0.26 -0.7
5,455,715 + Psyr_4595 0.26 +0.5
5,455,715 + Psyr_4595 0.26 +0.5
5,455,716 - Psyr_4595 0.26 +0.7
5,455,716 - Psyr_4595 0.26 +1.3
5,455,746 - Psyr_4595 0.28 -1.2
5,455,746 - Psyr_4595 0.28 +0.1
5,455,757 + Psyr_4595 0.29 +0.8
5,455,758 - Psyr_4595 0.29 -1.0
5,455,758 - Psyr_4595 0.29 -1.2
5,455,758 - Psyr_4595 0.29 +1.3
5,455,758 - Psyr_4595 0.29 -1.1
5,455,758 - Psyr_4595 0.29 +0.9
5,456,048 + Psyr_4595 0.48 +0.0
5,456,048 + Psyr_4595 0.48 +2.1
5,456,048 + Psyr_4595 0.48 -0.3
5,456,048 + Psyr_4595 0.48 -0.4
5,456,049 - Psyr_4595 0.48 +1.3
5,456,049 - Psyr_4595 0.48 +1.4
5,456,222 - Psyr_4595 0.60 +0.6
5,456,465 + Psyr_4595 0.76 +0.3
5,456,465 + Psyr_4595 0.76 +0.3
5,456,465 + Psyr_4595 0.76 -0.1
5,456,465 + Psyr_4595 0.76 +0.1
5,456,465 + Psyr_4595 0.76 -0.2
5,456,466 - Psyr_4595 0.76 -0.6
5,456,466 - Psyr_4595 0.76 -1.0
5,456,466 - Psyr_4595 0.76 -0.3
5,456,466 - Psyr_4595 0.76 +0.5
5,456,466 - Psyr_4595 0.76 -0.1
5,456,466 - Psyr_4595 0.76 +0.0
5,456,509 - Psyr_4595 0.79 +0.3
5,456,597 + Psyr_4595 0.85 +0.3
5,456,597 + Psyr_4595 0.85 +0.0
5,456,597 + Psyr_4595 0.85 +0.0
5,456,597 + Psyr_4595 0.85 +0.2
5,456,597 + Psyr_4595 0.85 +0.7
5,456,597 + Psyr_4595 0.85 +0.6
5,456,597 + Psyr_4595 0.85 +0.5
5,456,597 + Psyr_4595 0.85 -2.6
5,456,597 + Psyr_4595 0.85 +1.0
5,456,597 + Psyr_4595 0.85 +0.2
5,456,598 - Psyr_4595 0.85 +0.0
5,456,598 - Psyr_4595 0.85 -0.6
5,456,598 - Psyr_4595 0.85 +1.3
5,456,598 - Psyr_4595 0.85 -0.2
5,456,598 - Psyr_4595 0.85 +1.3
5,456,598 - Psyr_4595 0.85 +0.7
5,456,598 - Psyr_4595 0.85 +0.2
5,456,598 - Psyr_4595 0.85 +0.7
5,456,598 - Psyr_4595 0.85 +0.9
5,456,844 - -0.4
5,456,886 + Psyr_4596 0.23 -0.3
5,456,887 - Psyr_4596 0.24 +2.3
5,457,010 + Psyr_4596 0.89 +0.4
5,457,010 + Psyr_4596 0.89 -1.3
5,457,010 + Psyr_4596 0.89 +0.8
5,457,010 + Psyr_4596 0.89 -0.4
5,457,011 - Psyr_4596 0.89 +1.8
5,457,160 + Psyr_4597 0.23 +0.7
5,457,160 + Psyr_4597 0.23 -0.2
5,457,161 - Psyr_4597 0.23 +1.8
5,457,161 - Psyr_4597 0.23 -0.6
5,457,161 - Psyr_4597 0.23 +0.8
5,457,161 - Psyr_4597 0.23 +0.4
5,457,161 - Psyr_4597 0.23 -0.7
5,457,238 + Psyr_4597 0.36 +0.5
5,457,283 + Psyr_4597 0.43 +1.0
5,457,283 + Psyr_4597 0.43 +2.3
5,457,283 + Psyr_4597 0.43 -0.1
5,457,283 + Psyr_4597 0.43 +1.1
5,457,493 + Psyr_4597 0.79 -0.2
5,457,672 + -0.5

Or see this region's nucleotide sequence