Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4478 and Psyr_4479 are separated by 48 nucleotides Psyr_4479 and Psyr_4480 are separated by 318 nucleotides
Psyr_4478: Psyr_4478 - Alpha/beta hydrolase fold protein, at 5,340,075 to 5,340,893
_4478
Psyr_4479: Psyr_4479 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 5,340,942 to 5,341,790
_4479
Psyr_4480: Psyr_4480 - outer membrane transport energization protein TonB, at 5,342,109 to 5,342,918
_4480
Position (kb) 5340
5341
5342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5339.956 kb on + strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.981 kb on + strand at 5339.982 kb on - strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.036 kb on - strand at 5340.036 kb on - strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.564 kb on + strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.813 kb on + strand at 5340.954 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5340.999 kb on + strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.000 kb on - strand at 5341.155 kb on - strand, within Psyr_4479 at 5341.155 kb on - strand, within Psyr_4479 at 5341.263 kb on - strand, within Psyr_4479 at 5341.382 kb on - strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.552 kb on + strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.553 kb on - strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.563 kb on + strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.564 kb on - strand, within Psyr_4479 at 5341.779 kb on + strand at 5341.780 kb on - strand at 5341.878 kb on + strand at 5341.878 kb on + strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.879 kb on - strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.880 kb on + strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.881 kb on - strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.909 kb on + strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.910 kb on - strand at 5341.933 kb on + strand at 5341.977 kb on - strand at 5342.032 kb on - strand at 5342.034 kb on + strand at 5342.122 kb on + strand at 5342.122 kb on + strand at 5342.123 kb on - strand at 5342.152 kb on + strand at 5342.181 kb on - strand at 5342.685 kb on + strand, within Psyr_4480 at 5342.760 kb on - strand, within Psyr_4480
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,339,956 + +0.5 5,339,957 - -0.6 5,339,957 - +0.2 5,339,957 - -0.0 5,339,957 - -1.0 5,339,957 - +0.3 5,339,981 + +0.4 5,339,982 - -1.3 5,340,002 + +0.2 5,340,002 + -0.3 5,340,002 + +0.1 5,340,002 + +1.2 5,340,002 + -0.2 5,340,002 + -0.8 5,340,003 - -1.3 5,340,003 - -0.6 5,340,003 - -0.8 5,340,003 - +1.4 5,340,003 - -0.4 5,340,036 - -0.8 5,340,036 - +0.1 5,340,111 + +0.7 5,340,111 + +1.6 5,340,111 + +1.0 5,340,112 - +1.1 5,340,112 - -0.2 5,340,112 - -0.0 5,340,112 - -1.6 5,340,112 - -0.8 5,340,112 - -0.5 5,340,112 - -0.6 5,340,112 - +0.5 5,340,114 + -1.1 5,340,114 + +0.6 5,340,114 + -0.2 5,340,114 + +0.3 5,340,114 + -0.3 5,340,114 + -0.6 5,340,115 - +0.3 5,340,115 - -0.6 5,340,115 - -1.8 5,340,115 - +0.4 5,340,115 - -0.2 5,340,115 - -0.0 5,340,115 - +0.6 5,340,115 - +1.3 5,340,198 + Psyr_4478 0.15 +1.0 5,340,198 + Psyr_4478 0.15 +0.0 5,340,198 + Psyr_4478 0.15 +0.2 5,340,282 + Psyr_4478 0.25 +0.6 5,340,282 + Psyr_4478 0.25 +0.2 5,340,283 - Psyr_4478 0.25 -0.6 5,340,283 - Psyr_4478 0.25 +1.3 5,340,283 - Psyr_4478 0.25 -0.8 5,340,396 + Psyr_4478 0.39 -0.4 5,340,396 + Psyr_4478 0.39 -0.6 5,340,396 + Psyr_4478 0.39 -0.6 5,340,397 - Psyr_4478 0.39 +0.7 5,340,397 - Psyr_4478 0.39 +0.5 5,340,397 - Psyr_4478 0.39 -0.5 5,340,564 + Psyr_4478 0.60 +1.3 5,340,565 - Psyr_4478 0.60 -0.0 5,340,565 - Psyr_4478 0.60 +1.0 5,340,813 + +0.6 5,340,954 + +0.6 5,340,999 + -0.3 5,340,999 + -0.1 5,340,999 + +0.8 5,340,999 + -0.5 5,340,999 + +0.6 5,340,999 + +0.4 5,341,000 - -2.2 5,341,000 - +0.5 5,341,000 - +0.2 5,341,000 - +0.9 5,341,155 - Psyr_4479 0.25 -0.4 5,341,155 - Psyr_4479 0.25 -0.9 5,341,263 - Psyr_4479 0.38 -0.1 5,341,382 - Psyr_4479 0.52 -1.0 5,341,552 + Psyr_4479 0.72 +0.4 5,341,552 + Psyr_4479 0.72 -0.1 5,341,553 - Psyr_4479 0.72 +0.9 5,341,553 - Psyr_4479 0.72 -1.4 5,341,563 + Psyr_4479 0.73 -0.4 5,341,563 + Psyr_4479 0.73 -3.0 5,341,564 - Psyr_4479 0.73 -2.5 5,341,564 - Psyr_4479 0.73 -0.9 5,341,779 + -0.1 5,341,780 - +0.5 5,341,878 + +0.7 5,341,878 + -1.6 5,341,879 - +0.6 5,341,879 - +0.3 5,341,879 - -0.3 5,341,880 + +1.2 5,341,880 + -0.2 5,341,880 + +0.7 5,341,881 - +0.8 5,341,881 - +0.3 5,341,881 - +1.0 5,341,881 - +0.7 5,341,909 + +0.8 5,341,909 + +1.6 5,341,909 + +0.3 5,341,909 + +0.5 5,341,910 - -0.6 5,341,910 - +0.2 5,341,910 - +0.0 5,341,910 - +1.4 5,341,910 - -1.5 5,341,933 + -0.8 5,341,977 - -0.3 5,342,032 - -1.0 5,342,034 + +1.6 5,342,122 + +1.0 5,342,122 + -0.6 5,342,123 - -0.7 5,342,152 + +0.6 5,342,181 - -0.0 5,342,685 + Psyr_4480 0.71 -1.5 5,342,760 - Psyr_4480 0.80 +0.4
Or see this region's nucleotide sequence