Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4217 and Psyr_4218 are separated by 263 nucleotides Psyr_4218 and Psyr_4219 are separated by 410 nucleotides Psyr_4219 and Psyr_4220 are separated by 13 nucleotides
Psyr_4217: Psyr_4217 - tricorn interacting aminopeptidase F1, Serine peptidase, MEROPS family S33, at 5,022,527 to 5,023,450
_4217
Psyr_4218: Psyr_4218 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,023,714 to 5,025,339
_4218
Psyr_4219: Psyr_4219 - GAF, at 5,025,750 to 5,026,250
_4219
Psyr_4220: Psyr_4220 - GCN5-related N-acetyltransferase, at 5,026,264 to 5,026,719
_4220
Position (kb) 5023
5024
5025
5026 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5022.823 kb on + strand, within Psyr_4217 at 5022.824 kb on - strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.836 kb on + strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5022.837 kb on - strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.073 kb on + strand, within Psyr_4217 at 5023.074 kb on - strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.116 kb on + strand, within Psyr_4217 at 5023.117 kb on - strand, within Psyr_4217 at 5023.117 kb on - strand, within Psyr_4217 at 5023.123 kb on + strand, within Psyr_4217 at 5023.123 kb on + strand, within Psyr_4217 at 5023.124 kb on - strand, within Psyr_4217 at 5023.157 kb on + strand, within Psyr_4217 at 5023.158 kb on - strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.271 kb on + strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.272 kb on - strand, within Psyr_4217 at 5023.305 kb on - strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.357 kb on + strand, within Psyr_4217 at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.358 kb on - strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.368 kb on + strand at 5023.369 kb on - strand at 5023.369 kb on - strand at 5023.387 kb on + strand at 5023.387 kb on + strand at 5023.388 kb on - strand at 5023.454 kb on + strand at 5023.455 kb on - strand at 5023.498 kb on + strand at 5023.501 kb on + strand at 5023.502 kb on - strand at 5023.534 kb on + strand at 5023.535 kb on - strand at 5023.600 kb on + strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.601 kb on - strand at 5023.612 kb on + strand at 5023.612 kb on + strand at 5023.612 kb on + strand at 5023.665 kb on - strand at 5023.678 kb on + strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.679 kb on - strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.770 kb on + strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.771 kb on - strand at 5023.804 kb on + strand at 5023.804 kb on + strand at 5023.805 kb on - strand at 5023.805 kb on - strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.808 kb on + strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.809 kb on - strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.844 kb on + strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.845 kb on - strand at 5023.952 kb on + strand, within Psyr_4218 at 5023.953 kb on - strand, within Psyr_4218 at 5024.017 kb on + strand, within Psyr_4218 at 5024.089 kb on + strand, within Psyr_4218 at 5024.089 kb on + strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.090 kb on - strand, within Psyr_4218 at 5024.189 kb on - strand, within Psyr_4218 at 5024.210 kb on + strand at 5024.266 kb on + strand, within Psyr_4218 at 5024.266 kb on + strand, within Psyr_4218 at 5024.266 kb on + strand, within Psyr_4218 at 5024.267 kb on - strand, within Psyr_4218 at 5024.267 kb on - strand, within Psyr_4218 at 5024.327 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.670 kb on + strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.671 kb on - strand, within Psyr_4218 at 5024.796 kb on + strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.971 kb on - strand at 5024.971 kb on - strand, within Psyr_4218 at 5025.191 kb on + strand at 5025.191 kb on + strand at 5025.191 kb on + strand at 5025.192 kb on - strand at 5025.192 kb on - strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.403 kb on + strand at 5025.404 kb on - strand at 5025.404 kb on - strand at 5025.414 kb on + strand at 5025.414 kb on + strand at 5025.450 kb on - strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.525 kb on - strand at 5025.525 kb on - strand at 5025.534 kb on - strand at 5025.534 kb on - strand at 5025.534 kb on - strand at 5025.542 kb on + strand at 5025.542 kb on + strand at 5025.543 kb on - strand at 5025.551 kb on - strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.567 kb on + strand at 5025.600 kb on + strand at 5025.600 kb on + strand at 5025.600 kb on + strand at 5025.601 kb on - strand at 5025.615 kb on - strand at 5025.615 kb on - strand at 5025.636 kb on + strand at 5025.636 kb on + strand at 5025.637 kb on - strand at 5025.637 kb on - strand at 5025.645 kb on + strand at 5025.645 kb on + strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.661 kb on - strand at 5025.817 kb on + strand, within Psyr_4219 at 5025.818 kb on - strand, within Psyr_4219 at 5025.869 kb on - strand, within Psyr_4219 at 5025.869 kb on - strand, within Psyr_4219 at 5025.900 kb on + strand, within Psyr_4219 at 5025.990 kb on - strand, within Psyr_4219 at 5025.994 kb on + strand, within Psyr_4219 at 5026.023 kb on + strand, within Psyr_4219 at 5026.024 kb on - strand, within Psyr_4219 at 5026.041 kb on - strand, within Psyr_4219 at 5026.043 kb on + strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.178 kb on - strand, within Psyr_4219 at 5026.206 kb on + strand at 5026.206 kb on + strand at 5026.207 kb on - strand at 5026.215 kb on + strand at 5026.249 kb on - strand at 5026.249 kb on - strand at 5026.296 kb on + strand at 5026.296 kb on + strand at 5026.296 kb on + strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 5,022,823 + Psyr_4217 0.32 -0.8 5,022,824 - Psyr_4217 0.32 +1.0 5,022,836 + Psyr_4217 0.33 -1.0 5,022,836 + Psyr_4217 0.33 +0.5 5,022,836 + Psyr_4217 0.33 +1.0 5,022,836 + Psyr_4217 0.33 -1.8 5,022,836 + Psyr_4217 0.33 -1.6 5,022,837 - Psyr_4217 0.34 -1.2 5,022,837 - Psyr_4217 0.34 +1.0 5,022,837 - Psyr_4217 0.34 -0.5 5,022,837 - Psyr_4217 0.34 -0.8 5,023,073 + Psyr_4217 0.59 +0.1 5,023,073 + Psyr_4217 0.59 -0.6 5,023,073 + Psyr_4217 0.59 +0.1 5,023,073 + Psyr_4217 0.59 +1.8 5,023,073 + Psyr_4217 0.59 -3.0 5,023,073 + Psyr_4217 0.59 -1.5 5,023,074 - Psyr_4217 0.59 +1.1 5,023,116 + Psyr_4217 0.64 -0.6 5,023,116 + Psyr_4217 0.64 -0.6 5,023,116 + Psyr_4217 0.64 -0.0 5,023,116 + Psyr_4217 0.64 -2.0 5,023,117 - Psyr_4217 0.64 -1.5 5,023,117 - Psyr_4217 0.64 +2.8 5,023,123 + Psyr_4217 0.65 +0.5 5,023,123 + Psyr_4217 0.65 -0.1 5,023,124 - Psyr_4217 0.65 -0.0 5,023,157 + Psyr_4217 0.68 -1.0 5,023,158 - Psyr_4217 0.68 +0.4 5,023,271 + Psyr_4217 0.81 +1.0 5,023,271 + Psyr_4217 0.81 -0.4 5,023,271 + Psyr_4217 0.81 +0.0 5,023,272 - Psyr_4217 0.81 +0.4 5,023,272 - Psyr_4217 0.81 -0.2 5,023,272 - Psyr_4217 0.81 -0.2 5,023,305 - Psyr_4217 0.84 -0.1 5,023,357 + Psyr_4217 0.90 -0.7 5,023,357 + Psyr_4217 0.90 -1.7 5,023,357 + Psyr_4217 0.90 +0.4 5,023,357 + Psyr_4217 0.90 -1.8 5,023,358 - +2.0 5,023,358 - -0.3 5,023,358 - +2.3 5,023,358 - +1.5 5,023,358 - +0.2 5,023,358 - +0.4 5,023,358 - -1.7 5,023,368 + -0.0 5,023,368 + +1.0 5,023,368 + -1.2 5,023,368 + -0.3 5,023,368 + +0.2 5,023,368 + +0.0 5,023,368 + +0.4 5,023,369 - -0.8 5,023,369 - +0.6 5,023,387 + -0.6 5,023,387 + +1.0 5,023,388 - -0.0 5,023,454 + -1.9 5,023,455 - -1.4 5,023,498 + +0.3 5,023,501 + -1.0 5,023,502 - +1.0 5,023,534 + -0.7 5,023,535 - +0.6 5,023,600 + +0.2 5,023,601 - +2.2 5,023,601 - +0.2 5,023,601 - +0.9 5,023,601 - +1.0 5,023,601 - +1.0 5,023,612 + +0.6 5,023,612 + -2.0 5,023,612 + +0.4 5,023,665 - -0.7 5,023,678 + +0.1 5,023,679 - +1.0 5,023,679 - -0.4 5,023,679 - -0.4 5,023,679 - -0.2 5,023,770 + -1.0 5,023,770 + -0.3 5,023,770 + +1.2 5,023,770 + -0.4 5,023,770 + -1.6 5,023,770 + +0.7 5,023,770 + -0.3 5,023,771 - -0.8 5,023,771 - +1.1 5,023,771 - +0.2 5,023,771 - +0.5 5,023,771 - +1.3 5,023,804 + -0.7 5,023,804 + +1.6 5,023,805 - -0.0 5,023,805 - -0.8 5,023,808 + +1.0 5,023,808 + -1.8 5,023,808 + -0.0 5,023,808 + -0.0 5,023,808 + -0.2 5,023,808 + -1.0 5,023,808 + -0.8 5,023,809 - +1.4 5,023,809 - +2.0 5,023,809 - +0.6 5,023,809 - +1.0 5,023,809 - +1.3 5,023,809 - -0.3 5,023,844 + +0.5 5,023,844 + -2.9 5,023,844 + +0.2 5,023,844 + -0.7 5,023,844 + -2.2 5,023,844 + +0.2 5,023,844 + +0.1 5,023,844 + +0.4 5,023,844 + -0.0 5,023,844 + +1.5 5,023,844 + +0.7 5,023,844 + -0.3 5,023,844 + +1.3 5,023,844 + +0.7 5,023,845 - -0.5 5,023,845 - -0.8 5,023,845 - +0.1 5,023,845 - +1.0 5,023,845 - +0.2 5,023,845 - +0.3 5,023,845 - +1.4 5,023,845 - +0.9 5,023,845 - +0.5 5,023,845 - +1.6 5,023,845 - +0.1 5,023,845 - -0.0 5,023,845 - -1.7 5,023,952 + Psyr_4218 0.15 +1.5 5,023,953 - Psyr_4218 0.15 +0.4 5,024,017 + Psyr_4218 0.19 -0.0 5,024,089 + Psyr_4218 0.23 -0.2 5,024,089 + Psyr_4218 0.23 +0.7 5,024,090 - Psyr_4218 0.23 +1.0 5,024,090 - Psyr_4218 0.23 +0.5 5,024,090 - Psyr_4218 0.23 -1.2 5,024,090 - Psyr_4218 0.23 +0.6 5,024,090 - Psyr_4218 0.23 +1.8 5,024,090 - Psyr_4218 0.23 -1.7 5,024,090 - Psyr_4218 0.23 +0.1 5,024,090 - Psyr_4218 0.23 -1.8 5,024,189 - Psyr_4218 0.29 -0.8 5,024,210 + -1.0 5,024,266 + Psyr_4218 0.34 -0.6 5,024,266 + Psyr_4218 0.34 +0.1 5,024,266 + Psyr_4218 0.34 -0.3 5,024,267 - Psyr_4218 0.34 -0.5 5,024,267 - Psyr_4218 0.34 -2.5 5,024,327 + Psyr_4218 0.38 -0.3 5,024,670 + Psyr_4218 0.59 -0.2 5,024,670 + Psyr_4218 0.59 +0.7 5,024,670 + Psyr_4218 0.59 +0.3 5,024,670 + Psyr_4218 0.59 +0.5 5,024,670 + Psyr_4218 0.59 -0.2 5,024,670 + Psyr_4218 0.59 +0.2 5,024,670 + Psyr_4218 0.59 -0.9 5,024,671 - Psyr_4218 0.59 -1.1 5,024,671 - Psyr_4218 0.59 -0.4 5,024,671 - Psyr_4218 0.59 +0.8 5,024,671 - Psyr_4218 0.59 +0.2 5,024,796 + Psyr_4218 0.67 +0.1 5,024,797 - Psyr_4218 0.67 -0.0 5,024,797 - Psyr_4218 0.67 -0.8 5,024,797 - Psyr_4218 0.67 +0.2 5,024,971 - -0.0 5,024,971 - Psyr_4218 0.77 +1.0 5,025,191 + +0.1 5,025,191 + -0.0 5,025,191 + +0.4 5,025,192 - -0.0 5,025,192 - -0.3 5,025,337 + +0.6 5,025,337 + -0.0 5,025,337 + +0.8 5,025,337 + -1.2 5,025,337 + -1.2 5,025,337 + -0.5 5,025,337 + -2.3 5,025,338 - -0.3 5,025,338 - -1.8 5,025,338 - -0.6 5,025,338 - +1.1 5,025,338 - +0.9 5,025,338 - +0.0 5,025,338 - -0.0 5,025,403 + +1.3 5,025,404 - -0.1 5,025,404 - +0.2 5,025,414 + -1.5 5,025,414 + -0.5 5,025,450 - +1.6 5,025,524 + +0.4 5,025,524 + +0.7 5,025,524 + +0.5 5,025,524 + -0.4 5,025,525 - -0.0 5,025,525 - -0.0 5,025,534 - +0.7 5,025,534 - +0.1 5,025,534 - +0.2 5,025,542 + -0.0 5,025,542 + -0.4 5,025,543 - -0.9 5,025,551 - -0.4 5,025,554 + -0.9 5,025,554 + -0.0 5,025,554 + -0.4 5,025,554 + +1.2 5,025,554 + -1.2 5,025,567 + +0.8 5,025,600 + -1.6 5,025,600 + -1.1 5,025,600 + -0.0 5,025,601 - -0.0 5,025,615 - +0.7 5,025,615 - +1.5 5,025,636 + +0.4 5,025,636 + +0.4 5,025,637 - -1.8 5,025,637 - -0.7 5,025,645 + +0.4 5,025,645 + +0.6 5,025,646 - -0.2 5,025,646 - -0.1 5,025,646 - +0.3 5,025,646 - +1.0 5,025,661 - +0.4 5,025,817 + Psyr_4219 0.13 -1.8 5,025,818 - Psyr_4219 0.14 -0.8 5,025,869 - Psyr_4219 0.24 +0.1 5,025,869 - Psyr_4219 0.24 -0.4 5,025,900 + Psyr_4219 0.30 +0.4 5,025,990 - Psyr_4219 0.48 -0.9 5,025,994 + Psyr_4219 0.49 +1.2 5,026,023 + Psyr_4219 0.54 -0.4 5,026,024 - Psyr_4219 0.55 +2.0 5,026,041 - Psyr_4219 0.58 +0.1 5,026,043 + Psyr_4219 0.58 -2.2 5,026,044 - Psyr_4219 0.59 +0.4 5,026,044 - Psyr_4219 0.59 -0.3 5,026,044 - Psyr_4219 0.59 +0.8 5,026,044 - Psyr_4219 0.59 +0.6 5,026,044 - Psyr_4219 0.59 +0.2 5,026,065 + Psyr_4219 0.63 +0.4 5,026,065 + Psyr_4219 0.63 -0.4 5,026,065 + Psyr_4219 0.63 -0.3 5,026,065 + Psyr_4219 0.63 +0.8 5,026,065 + Psyr_4219 0.63 +0.4 5,026,065 + Psyr_4219 0.63 +0.0 5,026,065 + Psyr_4219 0.63 +1.4 5,026,066 - Psyr_4219 0.63 -0.8 5,026,066 - Psyr_4219 0.63 +0.4 5,026,066 - Psyr_4219 0.63 +0.2 5,026,066 - Psyr_4219 0.63 +0.6 5,026,066 - Psyr_4219 0.63 -0.2 5,026,066 - Psyr_4219 0.63 +0.2 5,026,177 + Psyr_4219 0.85 -0.8 5,026,177 + Psyr_4219 0.85 +1.2 5,026,177 + Psyr_4219 0.85 -1.4 5,026,177 + Psyr_4219 0.85 +0.7 5,026,178 - Psyr_4219 0.85 -0.4 5,026,206 + -1.6 5,026,206 + +0.2 5,026,207 - +0.5 5,026,215 + +2.2 5,026,249 - +0.4 5,026,249 - +0.6 5,026,296 + -0.7 5,026,296 + -1.4 5,026,296 + -0.5 5,026,297 - -0.9 5,026,297 - -0.5 5,026,297 - -0.1 5,026,297 - +0.2 5,026,297 - -0.6 5,026,297 - -1.1 5,026,297 - +0.1
Or see this region's nucleotide sequence