Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4039

Experiment: KB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB
4,824,609	-		Psyr_4038	0.83	-0.3
4,824,618	-		Psyr_4038	0.83	-0.0
4,824,749	+		Psyr_4038	0.88	-0.3
4,824,755	+		Psyr_4038	0.89	-0.2
4,824,757	+		Psyr_4038	0.89	-0.3
4,824,758	-		Psyr_4038	0.89	-1.7
4,824,782	-		Psyr_4038	0.90	-0.3
4,824,815	-				+1.9
4,824,930	+				-0.4
4,825,003	+				-1.7
4,825,004	-				-1.4
4,825,014	+				-0.5
4,825,034	+				+0.3
4,825,034	+				+0.2
4,825,034	+				+0.2
4,825,034	+				+0.7
4,825,036	+				+0.6
4,825,037	-				-1.3
4,825,037	-				-0.8
4,825,052	+				+0.7
4,825,214	+				+0.2
4,825,214	+				+1.3
4,825,214	+				-0.1
4,825,215	-				-2.3
4,825,215	-				-2.9
4,825,215	-				-0.0
4,825,353	-				-0.3
4,825,397	-				-1.8
4,825,478	-				-0.7
4,825,492	+				+0.3
4,825,493	-				-0.8
4,825,513	+				+0.5
4,825,513	+				-0.7
4,825,514	-				-0.7
4,825,517	-				+0.4
4,825,537	+				+0.1
4,825,557	+				+0.2
4,825,557	+				-2.1
4,825,557	+				-1.3
4,825,558	-				-1.2
4,825,558	-				-2.2
4,825,558	-				-1.1
4,825,558	-				+1.6
4,825,560	-				-0.1
4,825,603	-		Psyr_4039	0.12	-1.4
4,825,652	+		Psyr_4039	0.22	-0.4
4,825,652	+		Psyr_4039	0.22	+0.5
4,825,653	-		Psyr_4039	0.23	-3.2
4,825,653	-		Psyr_4039	0.23	-0.4
4,825,653	-		Psyr_4039	0.23	-0.8
4,825,653	-		Psyr_4039	0.23	-1.3
4,825,872	+		Psyr_4039	0.67	+0.4
4,825,872	+		Psyr_4039	0.67	-1.1
4,825,873	-		Psyr_4039	0.68	-0.9
4,825,873	-		Psyr_4039	0.68	+0.1
4,825,923	+		Psyr_4039	0.78	+0.9
4,825,944	+		Psyr_4039	0.82	+0.8
4,825,944	+		Psyr_4039	0.82	-0.5
4,825,944	+		Psyr_4039	0.82	-1.1
4,825,944	+		Psyr_4039	0.82	-0.1
4,825,945	-		Psyr_4039	0.82	-1.4
4,825,945	-		Psyr_4039	0.82	-2.0
4,826,007	-				-1.1
4,826,022	+				+0.3
4,826,022	+				-0.6
4,826,023	-				+0.6
4,826,050	+				-0.2
4,826,125	+				+0.6
4,826,125	+				-1.1
4,826,125	+				+1.1
4,826,125	+				-0.5
4,826,125	+				-0.2
4,826,125	+				+0.6
4,826,126	-				-0.8
4,826,126	-				-0.7
4,826,126	-				-0.0
4,826,126	-				+0.7
4,826,126	-				-0.3
4,826,130	-				+0.1
4,826,130	-				-0.5
4,826,130	-				+0.5
4,826,193	+		Psyr_4040	0.22	+1.3
4,826,193	+		Psyr_4040	0.22	+0.3
4,826,193	+		Psyr_4040	0.22	+0.7
4,826,194	-		Psyr_4040	0.22	+1.2
4,826,194	-		Psyr_4040	0.22	-0.3
4,826,194	-		Psyr_4040	0.22	+1.2
4,826,250	-		Psyr_4040	0.34	-0.6
4,826,250	-		Psyr_4040	0.34	-0.3
4,826,281	+		Psyr_4040	0.40	-0.1
4,826,281	+		Psyr_4040	0.40	-0.4
4,826,281	+		Psyr_4040	0.40	+1.0
4,826,286	+		Psyr_4040	0.41	+0.0
4,826,291	-		Psyr_4040	0.42	-2.2
4,826,393	+		Psyr_4040	0.62	+1.9
4,826,393	+		Psyr_4040	0.62	-0.4
4,826,394	-		Psyr_4040	0.62	+0.9
4,826,394	-		Psyr_4040	0.62	-0.9
4,826,437	+		Psyr_4040	0.71	-0.1
4,826,438	-		Psyr_4040	0.71	+0.2
4,826,443	-		Psyr_4040	0.72	-2.9
4,826,543	+				+1.2
4,826,543	+				-0.3
4,826,575	-				-0.7
4,826,646	+		Psyr_4041	0.15	+1.3
4,826,646	+		Psyr_4041	0.15	+0.9
4,826,646	+		Psyr_4041	0.15	-1.8
4,826,647	-		Psyr_4041	0.15	-0.4
4,826,647	-		Psyr_4041	0.15	-0.4
4,826,721	+		Psyr_4041	0.32	+0.9
4,826,721	+		Psyr_4041	0.32	+0.3
4,826,722	-		Psyr_4041	0.32	-1.3
4,826,724	-		Psyr_4041	0.33	-1.1
4,826,747	+		Psyr_4041	0.38	+0.0
4,826,748	-		Psyr_4041	0.38	+0.6
4,826,803	+		Psyr_4041	0.51	+0.1
4,826,851	+		Psyr_4041	0.62	-0.8
4,826,851	+		Psyr_4041	0.62	-1.4
4,826,851	+		Psyr_4041	0.62	-0.9
4,826,851	+		Psyr_4041	0.62	-0.5
4,826,851	+		Psyr_4041	0.62	+0.6
4,826,852	-		Psyr_4041	0.62	+1.4
4,826,867	-		Psyr_4041	0.66	-0.4
4,826,868	+		Psyr_4041	0.66	-1.9
4,826,868	+		Psyr_4041	0.66	+1.2
4,826,868	+		Psyr_4041	0.66	+0.9
4,826,904	-		Psyr_4041	0.74	-1.7
4,826,919	-		Psyr_4041	0.78	-1.1
4,826,979	-				+0.0
4,826,995	+				-1.7
4,826,995	+				+0.7
4,827,007	+				-2.1
4,827,008	-				-2.4