Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4011 and Psyr_4012 overlap by 1 nucleotides Psyr_4012 and Psyr_4013 overlap by 1 nucleotides
Psyr_4011: Psyr_4011 - Thiolase, at 4,778,415 to 4,779,614
_4011
Psyr_4012: Psyr_4012 - Glutaconate CoA-transferase, at 4,779,614 to 4,780,393
_4012
Psyr_4013: Psyr_4013 - Glutaconate CoA-transferase, at 4,780,393 to 4,781,250
_4013
Position (kb) 4779
4780
4781 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4778.706 kb on - strand, within Psyr_4011 at 4779.373 kb on - strand, within Psyr_4011 at 4779.582 kb on - strand at 4779.599 kb on + strand at 4779.599 kb on + strand at 4779.599 kb on + strand at 4779.600 kb on - strand at 4779.600 kb on - strand at 4780.045 kb on - strand, within Psyr_4012 at 4780.160 kb on + strand, within Psyr_4012 at 4780.248 kb on + strand, within Psyr_4012 at 4780.249 kb on - strand, within Psyr_4012 at 4780.249 kb on - strand, within Psyr_4012 at 4780.256 kb on + strand, within Psyr_4012 at 4780.276 kb on + strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.386 kb on + strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.394 kb on + strand at 4780.395 kb on - strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.520 kb on + strand, within Psyr_4013 at 4780.520 kb on + strand, within Psyr_4013 at 4780.520 kb on + strand, within Psyr_4013 at 4780.521 kb on - strand, within Psyr_4013 at 4780.541 kb on + strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013 at 4780.875 kb on - strand, within Psyr_4013 at 4780.915 kb on + strand, within Psyr_4013 at 4780.915 kb on + strand, within Psyr_4013 at 4780.915 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4781.081 kb on + strand, within Psyr_4013 at 4781.081 kb on + strand, within Psyr_4013 at 4781.081 kb on + strand, within Psyr_4013 at 4781.082 kb on - strand, within Psyr_4013 at 4781.082 kb on - strand, within Psyr_4013
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,778,706 - Psyr_4011 0.24 +0.9 4,779,373 - Psyr_4011 0.80 -0.5 4,779,582 - +0.3 4,779,599 + +0.3 4,779,599 + -0.4 4,779,599 + -1.7 4,779,600 - -0.2 4,779,600 - +0.4 4,780,045 - Psyr_4012 0.55 -0.3 4,780,160 + Psyr_4012 0.70 +1.0 4,780,248 + Psyr_4012 0.81 -1.4 4,780,249 - Psyr_4012 0.81 +1.4 4,780,249 - Psyr_4012 0.81 +1.3 4,780,256 + Psyr_4012 0.82 +0.1 4,780,276 + Psyr_4012 0.85 +0.5 4,780,277 - Psyr_4012 0.85 +0.8 4,780,277 - Psyr_4012 0.85 +0.9 4,780,277 - Psyr_4012 0.85 -1.6 4,780,277 - Psyr_4012 0.85 +1.0 4,780,277 - Psyr_4012 0.85 -0.5 4,780,386 + +0.3 4,780,387 - -0.8 4,780,387 - +1.3 4,780,387 - -1.3 4,780,387 - +0.0 4,780,394 + +0.5 4,780,395 - -1.0 4,780,460 + +1.2 4,780,460 + +1.3 4,780,460 + +1.9 4,780,460 + +0.7 4,780,460 + +0.2 4,780,460 + +0.4 4,780,460 + +2.2 4,780,460 + -0.1 4,780,460 + -0.6 4,780,460 + +0.2 4,780,460 + -0.6 4,780,460 + +0.5 4,780,461 - +0.9 4,780,461 - +0.0 4,780,461 - +1.6 4,780,461 - +0.9 4,780,461 - +0.4 4,780,461 - +1.6 4,780,461 - -1.2 4,780,461 - -0.0 4,780,461 - -0.9 4,780,461 - -0.4 4,780,461 - -0.4 4,780,520 + Psyr_4013 0.15 -0.5 4,780,520 + Psyr_4013 0.15 -1.1 4,780,520 + Psyr_4013 0.15 -0.1 4,780,521 - Psyr_4013 0.15 +0.4 4,780,541 + Psyr_4013 0.17 +3.4 4,780,542 - Psyr_4013 0.17 -2.1 4,780,542 - Psyr_4013 0.17 -1.1 4,780,875 - Psyr_4013 0.56 -0.0 4,780,915 + Psyr_4013 0.61 -0.1 4,780,915 + Psyr_4013 0.61 +1.0 4,780,915 + Psyr_4013 0.61 -0.6 4,780,919 + Psyr_4013 0.61 -0.1 4,780,919 + Psyr_4013 0.61 -1.3 4,780,919 + Psyr_4013 0.61 +0.3 4,780,919 + Psyr_4013 0.61 -1.3 4,780,920 - Psyr_4013 0.61 -0.5 4,780,920 - Psyr_4013 0.61 -0.5 4,780,920 - Psyr_4013 0.61 -0.3 4,780,920 - Psyr_4013 0.61 +0.4 4,781,081 + Psyr_4013 0.80 -0.7 4,781,081 + Psyr_4013 0.80 +0.2 4,781,081 + Psyr_4013 0.80 +0.4 4,781,082 - Psyr_4013 0.80 -0.6 4,781,082 - Psyr_4013 0.80 -1.0
Or see this region's nucleotide sequence