Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3642 and Psyr_3643 are separated by 121 nucleotides Psyr_3643 and Psyr_3644 overlap by 4 nucleotides Psyr_3644 and Psyr_3645 are separated by 57 nucleotides
Psyr_3642: Psyr_3642 - SSU ribosomal protein S1P, at 4,323,992 to 4,325,683
_3642
Psyr_3643: Psyr_3643 - cytidylate kinase, at 4,325,805 to 4,326,494
_3643
Psyr_3644: Psyr_3644 - prephenate dehydrogenase, at 4,326,491 to 4,328,095
_3644
Psyr_3645: Psyr_3645 - prephenate dehydratase, at 4,328,153 to 4,329,247
_3645
Position (kb) 4326
4327
4328
4329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4326.587 kb on - strand at 4326.809 kb on - strand, within Psyr_3644 at 4327.177 kb on + strand, within Psyr_3644 at 4327.244 kb on + strand, within Psyr_3644 at 4327.244 kb on + strand, within Psyr_3644 at 4327.245 kb on - strand, within Psyr_3644 at 4327.430 kb on + strand, within Psyr_3644 at 4327.431 kb on - strand, within Psyr_3644 at 4327.431 kb on - strand, within Psyr_3644 at 4327.633 kb on + strand, within Psyr_3644 at 4328.103 kb on + strand at 4328.104 kb on - strand at 4328.124 kb on - strand at 4328.124 kb on - strand at 4328.133 kb on - strand at 4328.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,326,587 - -0.7 4,326,809 - Psyr_3644 0.20 -0.5 4,327,177 + Psyr_3644 0.43 -1.8 4,327,244 + Psyr_3644 0.47 +0.8 4,327,244 + Psyr_3644 0.47 +0.0 4,327,245 - Psyr_3644 0.47 +0.2 4,327,430 + Psyr_3644 0.59 -1.6 4,327,431 - Psyr_3644 0.59 -2.2 4,327,431 - Psyr_3644 0.59 +1.8 4,327,633 + Psyr_3644 0.71 -0.6 4,328,103 + -0.6 4,328,104 - +1.6 4,328,124 - +0.1 4,328,124 - +0.3 4,328,133 - +1.9 4,328,133 - +0.1
Or see this region's nucleotide sequence