Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3555 and Psyr_3556 are separated by 91 nucleotides Psyr_3556 and Psyr_3557 are separated by 69 nucleotides
Psyr_3555: Psyr_3555 - aspartate kinase, at 4,233,778 to 4,235,010
_3555
Psyr_3556: Psyr_3556 - alanyl-tRNA synthetase, at 4,235,102 to 4,237,801
_3556
Psyr_3557: Psyr_3557 - L-threonine aldolase, at 4,237,871 to 4,238,875
_3557
Position (kb) 4235
4236
4237
4238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4234.291 kb on - strand, within Psyr_3555 at 4234.291 kb on - strand, within Psyr_3555 at 4234.291 kb on - strand, within Psyr_3555 at 4234.291 kb on - strand, within Psyr_3555 at 4235.048 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.803 kb on - strand at 4237.805 kb on - strand at 4237.805 kb on - strand at 4237.805 kb on - strand at 4237.807 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.853 kb on - strand at 4237.974 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.035 kb on - strand, within Psyr_3557 at 4238.152 kb on - strand, within Psyr_3557 at 4238.152 kb on - strand, within Psyr_3557 at 4238.359 kb on - strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.610 kb on + strand, within Psyr_3557 at 4238.611 kb on - strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.614 kb on + strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.615 kb on - strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.616 kb on + strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.617 kb on - strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.643 kb on + strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557 at 4238.644 kb on - strand, within Psyr_3557
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,234,291 - Psyr_3555 0.42 +1.9 4,234,291 - Psyr_3555 0.42 +2.1 4,234,291 - Psyr_3555 0.42 +1.0 4,234,291 - Psyr_3555 0.42 +2.3 4,235,048 - +0.1 4,237,803 - +0.5 4,237,803 - -2.0 4,237,803 - -1.5 4,237,803 - +0.8 4,237,803 - +0.4 4,237,805 - +1.6 4,237,805 - +0.8 4,237,805 - +2.6 4,237,807 - -1.7 4,237,853 - -0.8 4,237,853 - -0.6 4,237,853 - -1.2 4,237,853 - -0.2 4,237,974 - Psyr_3557 0.10 +0.3 4,238,035 - Psyr_3557 0.16 -0.6 4,238,035 - Psyr_3557 0.16 -0.2 4,238,035 - Psyr_3557 0.16 +1.1 4,238,035 - Psyr_3557 0.16 -0.8 4,238,035 - Psyr_3557 0.16 -0.8 4,238,152 - Psyr_3557 0.28 -0.9 4,238,152 - Psyr_3557 0.28 -0.8 4,238,359 - Psyr_3557 0.49 +0.4 4,238,610 + Psyr_3557 0.74 -0.1 4,238,610 + Psyr_3557 0.74 -1.8 4,238,610 + Psyr_3557 0.74 +1.0 4,238,610 + Psyr_3557 0.74 +0.8 4,238,610 + Psyr_3557 0.74 -0.0 4,238,610 + Psyr_3557 0.74 +1.1 4,238,610 + Psyr_3557 0.74 -0.1 4,238,611 - Psyr_3557 0.74 +1.2 4,238,614 + Psyr_3557 0.74 +1.1 4,238,614 + Psyr_3557 0.74 -0.1 4,238,614 + Psyr_3557 0.74 +1.1 4,238,614 + Psyr_3557 0.74 -1.2 4,238,614 + Psyr_3557 0.74 +0.8 4,238,614 + Psyr_3557 0.74 -0.2 4,238,614 + Psyr_3557 0.74 -0.8 4,238,615 - Psyr_3557 0.74 -0.1 4,238,615 - Psyr_3557 0.74 +1.3 4,238,615 - Psyr_3557 0.74 +2.8 4,238,615 - Psyr_3557 0.74 +1.4 4,238,615 - Psyr_3557 0.74 +0.1 4,238,615 - Psyr_3557 0.74 -0.6 4,238,615 - Psyr_3557 0.74 -1.2 4,238,615 - Psyr_3557 0.74 +0.1 4,238,616 + Psyr_3557 0.74 +0.5 4,238,616 + Psyr_3557 0.74 -2.1 4,238,616 + Psyr_3557 0.74 +1.1 4,238,616 + Psyr_3557 0.74 -0.2 4,238,616 + Psyr_3557 0.74 -0.2 4,238,616 + Psyr_3557 0.74 -1.2 4,238,616 + Psyr_3557 0.74 -0.2 4,238,616 + Psyr_3557 0.74 -1.2 4,238,616 + Psyr_3557 0.74 +0.6 4,238,617 - Psyr_3557 0.74 +1.3 4,238,617 - Psyr_3557 0.74 +0.9 4,238,617 - Psyr_3557 0.74 -0.4 4,238,617 - Psyr_3557 0.74 +0.3 4,238,617 - Psyr_3557 0.74 -0.6 4,238,617 - Psyr_3557 0.74 -0.4 4,238,643 + Psyr_3557 0.77 +0.1 4,238,643 + Psyr_3557 0.77 -0.8 4,238,643 + Psyr_3557 0.77 -0.8 4,238,644 - Psyr_3557 0.77 -0.7 4,238,644 - Psyr_3557 0.77 +0.8 4,238,644 - Psyr_3557 0.77 +1.8 4,238,644 - Psyr_3557 0.77 +0.0 4,238,644 - Psyr_3557 0.77 -0.8 4,238,644 - Psyr_3557 0.77 +0.5 4,238,644 - Psyr_3557 0.77 +0.8 4,238,644 - Psyr_3557 0.77 +0.8 4,238,644 - Psyr_3557 0.77 +0.5 4,238,644 - Psyr_3557 0.77 +0.3
Or see this region's nucleotide sequence