Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3540

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3539 and Psyr_3540 are separated by 59 nucleotidesPsyr_3540 and Psyr_3541 are separated by 64 nucleotidesPsyr_3541 and Psyr_3542 are separated by 80 nucleotides Psyr_3539: Psyr_3539 - Short-chain dehydrogenase/reductase SDR, at 4,217,038 to 4,217,826 _3539 Psyr_3540: Psyr_3540 - Zinc-containing alcohol dehydrogenase superfamily, at 4,217,886 to 4,218,887 _3540 Psyr_3541: Psyr_3541 - Short-chain dehydrogenase/reductase SDR, at 4,218,952 to 4,219,764 _3541 Psyr_3542: Psyr_3542 - Short-chain dehydrogenase/reductase SDR, at 4,219,845 to 4,220,594 _3542 Position (kb) 4217 4218 4219Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4217.022 kb on + strandat 4217.023 kb on - strandat 4217.023 kb on - strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.093 kb on + strandat 4217.093 kb on + strandat 4217.093 kb on + strandat 4217.093 kb on + strandat 4217.093 kb on + strandat 4217.094 kb on - strandat 4217.094 kb on - strandat 4217.094 kb on - strandat 4217.094 kb on - strandat 4217.095 kb on + strandat 4217.095 kb on + strandat 4217.096 kb on - strandat 4217.096 kb on - strandat 4217.096 kb on - strandat 4217.096 kb on - strandat 4217.096 kb on - strandat 4217.512 kb on + strand, within Psyr_3539at 4217.512 kb on + strand, within Psyr_3539at 4217.512 kb on + strand, within Psyr_3539at 4217.512 kb on + strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.513 kb on - strand, within Psyr_3539at 4217.565 kb on - strand, within Psyr_3539at 4217.566 kb on + strand, within Psyr_3539at 4217.566 kb on + strand, within Psyr_3539at 4217.566 kb on + strand, within Psyr_3539at 4217.566 kb on + strand, within Psyr_3539at 4217.566 kb on + strand, within Psyr_3539at 4217.566 kb on + strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.567 kb on - strand, within Psyr_3539at 4217.637 kb on + strand, within Psyr_3539at 4217.637 kb on + strand, within Psyr_3539at 4217.637 kb on + strand, within Psyr_3539at 4217.637 kb on + strand, within Psyr_3539at 4217.638 kb on - strand, within Psyr_3539at 4217.638 kb on - strand, within Psyr_3539at 4217.910 kb on + strandat 4218.275 kb on + strand, within Psyr_3540at 4218.275 kb on + strand, within Psyr_3540at 4218.425 kb on + strand, within Psyr_3540at 4218.425 kb on + strand, within Psyr_3540at 4218.425 kb on + strand, within Psyr_3540at 4218.425 kb on + strand, within Psyr_3540at 4218.426 kb on - strand, within Psyr_3540at 4218.468 kb on + strand, within Psyr_3540at 4218.469 kb on - strand, within Psyr_3540at 4218.583 kb on + strand, within Psyr_3540at 4218.583 kb on + strand, within Psyr_3540at 4218.584 kb on - strand, within Psyr_3540at 4218.584 kb on - strand, within Psyr_3540at 4218.653 kb on - strand, within Psyr_3540at 4218.709 kb on - strand, within Psyr_3540at 4218.885 kb on + strandat 4218.886 kb on - strandat 4218.886 kb on - strandat 4218.886 kb on - strandat 4218.897 kb on - strandat 4219.332 kb on + strand, within Psyr_3541at 4219.372 kb on + strand, within Psyr_3541at 4219.415 kb on - strand, within Psyr_3541at 4219.480 kb on + strand, within Psyr_3541at 4219.480 kb on + strand, within Psyr_3541at 4219.481 kb on - strand, within Psyr_3541at 4219.481 kb on - strand, within Psyr_3541at 4219.481 kb on - strand, within Psyr_3541at 4219.484 kb on + strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.485 kb on - strand, within Psyr_3541at 4219.537 kb on + strandat 4219.537 kb on + strand, within Psyr_3541at 4219.537 kb on + strand, within Psyr_3541at 4219.537 kb on + strand, within Psyr_3541at 4219.660 kb on + strand, within Psyr_3541at 4219.661 kb on - strand, within Psyr_3541at 4219.661 kb on - strand, within Psyr_3541at 4219.697 kb on + strandat 4219.762 kb on + strandat 4219.762 kb on + strandat 4219.762 kb on + strandat 4219.763 kb on - strandat 4219.789 kb on + strandat 4219.789 kb on + strandat 4219.790 kb on - strandat 4219.790 kb on - strandat 4219.790 kb on - strandat 4219.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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4,217,022 + +0.6
4,217,023 - -0.3
4,217,023 - -1.6
4,217,028 + -0.6
4,217,028 + -1.9
4,217,028 + -0.6
4,217,028 + +0.4
4,217,028 + +0.6
4,217,028 + +0.2
4,217,029 - -1.0
4,217,029 - -0.4
4,217,029 - +1.3
4,217,029 - +0.5
4,217,029 - +0.3
4,217,029 - +1.1
4,217,029 - +0.1
4,217,093 + -0.8
4,217,093 + -0.9
4,217,093 + +0.5
4,217,093 + -0.7
4,217,093 + +0.8
4,217,094 - +1.6
4,217,094 - +0.8
4,217,094 - +0.8
4,217,094 - +0.8
4,217,095 + -0.0
4,217,095 + +0.2
4,217,096 - +2.3
4,217,096 - +2.3
4,217,096 - +0.2
4,217,096 - -0.3
4,217,096 - +0.8
4,217,512 + Psyr_3539 0.60 +0.2
4,217,512 + Psyr_3539 0.60 +1.2
4,217,512 + Psyr_3539 0.60 -0.2
4,217,512 + Psyr_3539 0.60 -0.7
4,217,513 - Psyr_3539 0.60 -1.0
4,217,513 - Psyr_3539 0.60 -0.6
4,217,513 - Psyr_3539 0.60 +0.6
4,217,513 - Psyr_3539 0.60 -0.8
4,217,513 - Psyr_3539 0.60 +0.9
4,217,513 - Psyr_3539 0.60 -0.4
4,217,513 - Psyr_3539 0.60 +0.1
4,217,513 - Psyr_3539 0.60 -0.9
4,217,565 - Psyr_3539 0.67 -0.3
4,217,566 + Psyr_3539 0.67 -0.8
4,217,566 + Psyr_3539 0.67 -1.5
4,217,566 + Psyr_3539 0.67 +1.4
4,217,566 + Psyr_3539 0.67 +0.8
4,217,566 + Psyr_3539 0.67 -1.6
4,217,566 + Psyr_3539 0.67 +0.4
4,217,567 - Psyr_3539 0.67 +0.5
4,217,567 - Psyr_3539 0.67 -1.6
4,217,567 - Psyr_3539 0.67 +1.4
4,217,567 - Psyr_3539 0.67 -0.6
4,217,567 - Psyr_3539 0.67 -0.6
4,217,567 - Psyr_3539 0.67 -0.1
4,217,567 - Psyr_3539 0.67 -1.4
4,217,567 - Psyr_3539 0.67 -0.5
4,217,567 - Psyr_3539 0.67 +1.2
4,217,567 - Psyr_3539 0.67 +0.1
4,217,567 - Psyr_3539 0.67 -0.6
4,217,567 - Psyr_3539 0.67 +0.2
4,217,637 + Psyr_3539 0.76 -1.0
4,217,637 + Psyr_3539 0.76 -0.7
4,217,637 + Psyr_3539 0.76 -0.8
4,217,637 + Psyr_3539 0.76 -0.2
4,217,638 - Psyr_3539 0.76 -0.6
4,217,638 - Psyr_3539 0.76 -0.3
4,217,910 + -0.0
4,218,275 + Psyr_3540 0.39 +2.5
4,218,275 + Psyr_3540 0.39 +0.2
4,218,425 + Psyr_3540 0.54 -0.2
4,218,425 + Psyr_3540 0.54 -0.2
4,218,425 + Psyr_3540 0.54 +1.4
4,218,425 + Psyr_3540 0.54 -0.2
4,218,426 - Psyr_3540 0.54 +0.8
4,218,468 + Psyr_3540 0.58 +1.4
4,218,469 - Psyr_3540 0.58 -0.8
4,218,583 + Psyr_3540 0.70 +2.3
4,218,583 + Psyr_3540 0.70 +0.8
4,218,584 - Psyr_3540 0.70 +0.8
4,218,584 - Psyr_3540 0.70 -0.0
4,218,653 - Psyr_3540 0.77 +0.6
4,218,709 - Psyr_3540 0.82 -1.1
4,218,885 + -0.1
4,218,886 - +0.8
4,218,886 - +0.3
4,218,886 - +0.1
4,218,897 - -0.2
4,219,332 + Psyr_3541 0.47 -1.6
4,219,372 + Psyr_3541 0.52 +0.4
4,219,415 - Psyr_3541 0.57 +1.5
4,219,480 + Psyr_3541 0.65 -1.4
4,219,480 + Psyr_3541 0.65 +0.6
4,219,481 - Psyr_3541 0.65 -0.2
4,219,481 - Psyr_3541 0.65 -0.3
4,219,481 - Psyr_3541 0.65 -0.6
4,219,484 + Psyr_3541 0.65 +0.1
4,219,485 - Psyr_3541 0.66 -0.5
4,219,485 - Psyr_3541 0.66 +1.1
4,219,485 - Psyr_3541 0.66 +0.4
4,219,485 - Psyr_3541 0.66 -0.6
4,219,537 + -1.6
4,219,537 + Psyr_3541 0.72 -0.1
4,219,537 + Psyr_3541 0.72 +2.8
4,219,537 + Psyr_3541 0.72 +0.4
4,219,660 + Psyr_3541 0.87 -0.2
4,219,661 - Psyr_3541 0.87 +1.9
4,219,661 - Psyr_3541 0.87 -1.1
4,219,697 + +0.2
4,219,762 + -0.7
4,219,762 + +2.8
4,219,762 + +2.3
4,219,763 - +0.2
4,219,789 + +1.3
4,219,789 + -0.2
4,219,790 - -0.4
4,219,790 - -1.8
4,219,790 - -0.2
4,219,790 - +0.8

Or see this region's nucleotide sequence