Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3496

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3494 and Psyr_3495 are separated by 63 nucleotidesPsyr_3495 and Psyr_3496 overlap by 4 nucleotidesPsyr_3496 and Psyr_3497 are separated by 402 nucleotides Psyr_3494: Psyr_3494 - hypothetical protein, at 4,163,449 to 4,164,258 _3494 Psyr_3495: Psyr_3495 - ATP-binding region, ATPase-like protein, at 4,164,322 to 4,165,017 _3495 Psyr_3496: Psyr_3496 - TPR repeat:Response regulator receiver:Response regulator receiver:Response regulator receiver, at 4,165,014 to 4,166,615 _3496 Psyr_3497: Psyr_3497 - SH3-like region, at 4,167,018 to 4,167,848 _3497 Position (kb) 4165 4166 4167Strain fitness (log2 ratio) -2 -1 0 1 2at 4164.048 kb on + strand, within Psyr_3494at 4164.061 kb on + strand, within Psyr_3494at 4164.061 kb on + strand, within Psyr_3494at 4164.062 kb on - strand, within Psyr_3494at 4164.229 kb on - strandat 4164.252 kb on + strandat 4164.253 kb on - strandat 4164.253 kb on - strandat 4164.256 kb on + strandat 4164.256 kb on + strandat 4164.256 kb on + strandat 4164.256 kb on + strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.434 kb on + strand, within Psyr_3495at 4164.434 kb on + strand, within Psyr_3495at 4164.482 kb on + strand, within Psyr_3495at 4164.482 kb on + strand, within Psyr_3495at 4164.483 kb on - strand, within Psyr_3495at 4164.483 kb on - strand, within Psyr_3495at 4164.506 kb on + strand, within Psyr_3495at 4164.507 kb on - strand, within Psyr_3495at 4164.618 kb on + strand, within Psyr_3495at 4164.619 kb on - strand, within Psyr_3495at 4164.807 kb on - strand, within Psyr_3495at 4164.807 kb on - strand, within Psyr_3495at 4164.807 kb on - strand, within Psyr_3495at 4164.854 kb on + strand, within Psyr_3495at 4164.854 kb on + strand, within Psyr_3495at 4164.855 kb on - strand, within Psyr_3495at 4165.043 kb on + strandat 4165.043 kb on + strandat 4165.044 kb on - strandat 4165.179 kb on - strand, within Psyr_3496at 4165.252 kb on + strand, within Psyr_3496at 4165.252 kb on + strand, within Psyr_3496at 4165.252 kb on + strand, within Psyr_3496at 4165.253 kb on - strand, within Psyr_3496at 4165.253 kb on - strand, within Psyr_3496at 4165.253 kb on - strand, within Psyr_3496at 4165.364 kb on - strand, within Psyr_3496at 4165.954 kb on + strand, within Psyr_3496at 4165.954 kb on + strand, within Psyr_3496at 4166.108 kb on - strand, within Psyr_3496at 4166.108 kb on - strand, within Psyr_3496at 4166.358 kb on + strand, within Psyr_3496at 4166.358 kb on + strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.586 kb on - strandat 4166.605 kb on + strandat 4166.605 kb on + strandat 4166.606 kb on - strandat 4166.646 kb on + strandat 4166.647 kb on - strandat 4166.710 kb on + strandat 4166.710 kb on + strandat 4166.711 kb on - strandat 4166.822 kb on + strandat 4166.822 kb on + strandat 4167.014 kb on + strandat 4167.014 kb on + strandat 4167.015 kb on - strandat 4167.019 kb on + strandat 4167.019 kb on + strandat 4167.020 kb on - strandat 4167.020 kb on - strandat 4167.118 kb on + strand, within Psyr_3497at 4167.118 kb on + strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.522 kb on + strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.530 kb on + strand, within Psyr_3497at 4167.531 kb on - strand, within Psyr_3497

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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4,164,048 + Psyr_3494 0.74 -0.0
4,164,061 + Psyr_3494 0.76 -2.1
4,164,061 + Psyr_3494 0.76 +0.4
4,164,062 - Psyr_3494 0.76 +0.2
4,164,229 - -0.7
4,164,252 + -0.7
4,164,253 - +0.3
4,164,253 - -2.2
4,164,256 + +1.2
4,164,256 + -0.4
4,164,256 + -0.8
4,164,256 + +0.9
4,164,257 - +0.3
4,164,257 - +0.8
4,164,257 - +0.3
4,164,257 - +0.5
4,164,257 - +0.3
4,164,403 + Psyr_3495 0.12 -0.1
4,164,403 + Psyr_3495 0.12 +0.0
4,164,403 + Psyr_3495 0.12 -1.0
4,164,403 + Psyr_3495 0.12 +0.9
4,164,403 + Psyr_3495 0.12 -1.1
4,164,403 + Psyr_3495 0.12 +0.6
4,164,403 + Psyr_3495 0.12 -1.6
4,164,404 - Psyr_3495 0.12 -0.2
4,164,404 - Psyr_3495 0.12 -0.2
4,164,404 - Psyr_3495 0.12 +0.6
4,164,404 - Psyr_3495 0.12 -0.2
4,164,434 + Psyr_3495 0.16 -0.7
4,164,434 + Psyr_3495 0.16 -0.2
4,164,482 + Psyr_3495 0.23 +0.3
4,164,482 + Psyr_3495 0.23 +0.5
4,164,483 - Psyr_3495 0.23 -1.1
4,164,483 - Psyr_3495 0.23 +1.1
4,164,506 + Psyr_3495 0.26 +0.1
4,164,507 - Psyr_3495 0.27 -1.8
4,164,618 + Psyr_3495 0.43 +1.9
4,164,619 - Psyr_3495 0.43 -0.8
4,164,807 - Psyr_3495 0.70 +0.3
4,164,807 - Psyr_3495 0.70 -0.6
4,164,807 - Psyr_3495 0.70 -0.4
4,164,854 + Psyr_3495 0.76 -1.6
4,164,854 + Psyr_3495 0.76 +1.8
4,164,855 - Psyr_3495 0.77 -1.4
4,165,043 + +0.2
4,165,043 + -0.6
4,165,044 - +0.7
4,165,179 - Psyr_3496 0.10 -0.6
4,165,252 + Psyr_3496 0.15 -0.5
4,165,252 + Psyr_3496 0.15 -1.2
4,165,252 + Psyr_3496 0.15 +1.8
4,165,253 - Psyr_3496 0.15 -1.4
4,165,253 - Psyr_3496 0.15 -0.5
4,165,253 - Psyr_3496 0.15 -0.2
4,165,364 - Psyr_3496 0.22 -0.8
4,165,954 + Psyr_3496 0.59 -0.8
4,165,954 + Psyr_3496 0.59 +1.6
4,166,108 - Psyr_3496 0.68 +0.6
4,166,108 - Psyr_3496 0.68 -1.2
4,166,358 + Psyr_3496 0.84 -0.3
4,166,358 + Psyr_3496 0.84 +0.0
4,166,359 - Psyr_3496 0.84 -0.9
4,166,359 - Psyr_3496 0.84 -0.3
4,166,359 - Psyr_3496 0.84 -2.4
4,166,359 - Psyr_3496 0.84 +0.9
4,166,586 - +0.3
4,166,605 + -0.3
4,166,605 + -1.6
4,166,606 - +1.2
4,166,646 + +0.1
4,166,647 - +1.6
4,166,710 + +1.3
4,166,710 + -0.7
4,166,711 - +1.3
4,166,822 + +0.9
4,166,822 + +0.3
4,167,014 + -0.1
4,167,014 + +1.2
4,167,015 - +0.6
4,167,019 + +1.0
4,167,019 + -0.6
4,167,020 - -0.2
4,167,020 - +0.3
4,167,118 + Psyr_3497 0.12 -0.2
4,167,118 + Psyr_3497 0.12 +0.2
4,167,119 - Psyr_3497 0.12 +0.5
4,167,119 - Psyr_3497 0.12 +0.2
4,167,119 - Psyr_3497 0.12 +0.2
4,167,522 + Psyr_3497 0.61 -0.6
4,167,523 - Psyr_3497 0.61 -0.1
4,167,523 - Psyr_3497 0.61 -0.5
4,167,523 - Psyr_3497 0.61 +0.9
4,167,523 - Psyr_3497 0.61 -0.8
4,167,526 + Psyr_3497 0.61 +0.5
4,167,526 + Psyr_3497 0.61 +0.3
4,167,526 + Psyr_3497 0.61 -0.6
4,167,526 + Psyr_3497 0.61 +0.4
4,167,526 + Psyr_3497 0.61 -2.6
4,167,526 + Psyr_3497 0.61 +0.8
4,167,526 + Psyr_3497 0.61 -0.2
4,167,526 + Psyr_3497 0.61 +0.3
4,167,527 - Psyr_3497 0.61 +1.6
4,167,527 - Psyr_3497 0.61 +0.3
4,167,527 - Psyr_3497 0.61 -0.5
4,167,527 - Psyr_3497 0.61 +0.4
4,167,527 - Psyr_3497 0.61 +0.4
4,167,527 - Psyr_3497 0.61 -1.1
4,167,527 - Psyr_3497 0.61 -0.7
4,167,527 - Psyr_3497 0.61 +0.8
4,167,527 - Psyr_3497 0.61 +0.6
4,167,527 - Psyr_3497 0.61 -0.3
4,167,527 - Psyr_3497 0.61 -0.3
4,167,530 + Psyr_3497 0.62 +0.6
4,167,531 - Psyr_3497 0.62 -0.1

Or see this region's nucleotide sequence