Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3476 and Psyr_3477 are separated by 475 nucleotides Psyr_3477 and Psyr_3478 are separated by 197 nucleotides
Psyr_3476: Psyr_3476 - Flagellar basal body rod protein:Protein of unknown function DUF1078, at 4,146,472 to 4,147,212
_3476
Psyr_3477: Psyr_3477 - Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE, at 4,147,688 to 4,149,436
_3477
Psyr_3478: Psyr_3478 - Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE, at 4,149,634 to 4,150,962
_3478
Position (kb) 4147
4148
4149
4150 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4146.917 kb on + strand, within Psyr_3476 at 4146.917 kb on + strand, within Psyr_3476 at 4146.917 kb on + strand, within Psyr_3476 at 4146.918 kb on - strand, within Psyr_3476 at 4147.196 kb on + strand at 4147.196 kb on + strand at 4147.246 kb on + strand at 4147.247 kb on - strand at 4147.299 kb on - strand at 4147.459 kb on - strand at 4147.580 kb on + strand at 4147.580 kb on + strand at 4147.580 kb on + strand at 4147.581 kb on - strand at 4147.583 kb on + strand at 4147.583 kb on + strand at 4147.584 kb on - strand at 4147.584 kb on - strand at 4147.584 kb on - strand at 4147.584 kb on - strand at 4147.584 kb on - strand at 4147.584 kb on - strand at 4147.847 kb on - strand at 4147.866 kb on + strand, within Psyr_3477 at 4147.866 kb on + strand, within Psyr_3477 at 4147.867 kb on - strand, within Psyr_3477 at 4147.907 kb on - strand, within Psyr_3477 at 4147.972 kb on + strand, within Psyr_3477 at 4147.972 kb on + strand, within Psyr_3477 at 4147.972 kb on + strand, within Psyr_3477 at 4147.973 kb on - strand, within Psyr_3477 at 4147.973 kb on - strand, within Psyr_3477 at 4148.391 kb on + strand, within Psyr_3477 at 4148.391 kb on + strand, within Psyr_3477 at 4148.392 kb on - strand, within Psyr_3477 at 4148.392 kb on - strand, within Psyr_3477 at 4148.454 kb on + strand, within Psyr_3477 at 4148.454 kb on + strand, within Psyr_3477 at 4148.454 kb on + strand, within Psyr_3477 at 4148.454 kb on + strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.455 kb on - strand, within Psyr_3477 at 4148.679 kb on + strand, within Psyr_3477 at 4148.680 kb on - strand, within Psyr_3477 at 4148.730 kb on - strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.772 kb on + strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.773 kb on - strand, within Psyr_3477 at 4148.808 kb on + strand, within Psyr_3477 at 4148.808 kb on + strand, within Psyr_3477 at 4148.808 kb on + strand, within Psyr_3477 at 4148.808 kb on + strand, within Psyr_3477 at 4148.809 kb on - strand, within Psyr_3477 at 4148.809 kb on - strand, within Psyr_3477 at 4148.956 kb on + strand, within Psyr_3477 at 4148.957 kb on - strand, within Psyr_3477 at 4149.002 kb on - strand, within Psyr_3477 at 4149.133 kb on + strand, within Psyr_3477 at 4149.134 kb on - strand, within Psyr_3477 at 4149.135 kb on + strand, within Psyr_3477 at 4149.135 kb on + strand, within Psyr_3477 at 4149.135 kb on + strand, within Psyr_3477 at 4149.136 kb on - strand, within Psyr_3477 at 4149.184 kb on + strand, within Psyr_3477 at 4149.185 kb on - strand, within Psyr_3477 at 4149.191 kb on - strand, within Psyr_3477 at 4149.260 kb on + strand, within Psyr_3477 at 4149.260 kb on + strand, within Psyr_3477 at 4149.309 kb on + strand at 4149.310 kb on - strand at 4149.310 kb on - strand at 4149.310 kb on - strand at 4149.310 kb on - strand at 4149.310 kb on - strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.311 kb on + strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.312 kb on - strand at 4149.367 kb on + strand at 4149.367 kb on + strand at 4149.410 kb on - strand at 4149.425 kb on - strand at 4149.467 kb on - strand at 4149.477 kb on + strand at 4149.512 kb on + strand at 4149.513 kb on - strand at 4149.546 kb on - strand at 4149.556 kb on + strand at 4149.556 kb on + strand at 4149.557 kb on - strand at 4149.635 kb on + strand at 4149.635 kb on + strand at 4149.635 kb on + strand at 4149.635 kb on + strand at 4149.635 kb on + strand at 4149.636 kb on - strand at 4149.636 kb on - strand at 4149.649 kb on - strand at 4149.701 kb on + strand at 4149.701 kb on + strand at 4149.701 kb on + strand at 4149.701 kb on + strand at 4149.701 kb on + strand at 4149.702 kb on - strand at 4149.702 kb on - strand at 4149.782 kb on + strand, within Psyr_3478 at 4149.782 kb on + strand, within Psyr_3478 at 4149.782 kb on + strand, within Psyr_3478 at 4149.782 kb on + strand, within Psyr_3478 at 4149.782 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.935 kb on + strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4149.936 kb on - strand, within Psyr_3478 at 4150.104 kb on + strand, within Psyr_3478 at 4150.104 kb on + strand, within Psyr_3478 at 4150.105 kb on - strand, within Psyr_3478 at 4150.105 kb on - strand, within Psyr_3478 at 4150.161 kb on + strand, within Psyr_3478 at 4150.161 kb on + strand, within Psyr_3478 at 4150.162 kb on - strand, within Psyr_3478 at 4150.162 kb on - strand, within Psyr_3478 at 4150.162 kb on - strand, within Psyr_3478 at 4150.197 kb on + strand, within Psyr_3478 at 4150.197 kb on + strand, within Psyr_3478 at 4150.255 kb on - strand, within Psyr_3478 at 4150.313 kb on + strand, within Psyr_3478 at 4150.313 kb on + strand, within Psyr_3478 at 4150.313 kb on + strand, within Psyr_3478 at 4150.313 kb on + strand, within Psyr_3478 at 4150.314 kb on - strand, within Psyr_3478 at 4150.314 kb on - strand, within Psyr_3478 at 4150.314 kb on - strand, within Psyr_3478 at 4150.314 kb on - strand, within Psyr_3478 at 4150.349 kb on + strand, within Psyr_3478 at 4150.350 kb on - strand, within Psyr_3478 at 4150.385 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.400 kb on + strand, within Psyr_3478 at 4150.401 kb on - strand, within Psyr_3478 at 4150.401 kb on - strand, within Psyr_3478 at 4150.401 kb on - strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.412 kb on + strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.413 kb on - strand, within Psyr_3478 at 4150.416 kb on + strand, within Psyr_3478 at 4150.416 kb on + strand, within Psyr_3478 at 4150.416 kb on + strand, within Psyr_3478 at 4150.417 kb on - strand, within Psyr_3478
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 4,146,917 + Psyr_3476 0.60 -0.2 4,146,917 + Psyr_3476 0.60 +0.2 4,146,917 + Psyr_3476 0.60 +1.5 4,146,918 - Psyr_3476 0.60 +1.3 4,147,196 + +0.2 4,147,196 + +0.8 4,147,246 + +0.0 4,147,247 - +0.4 4,147,299 - -0.6 4,147,459 - +0.5 4,147,580 + +0.4 4,147,580 + -0.8 4,147,580 + -0.9 4,147,581 - -0.1 4,147,583 + -0.6 4,147,583 + -0.0 4,147,584 - +0.3 4,147,584 - -1.6 4,147,584 - +0.8 4,147,584 - -0.4 4,147,584 - -0.3 4,147,584 - -0.8 4,147,847 - +1.4 4,147,866 + Psyr_3477 0.10 -1.4 4,147,866 + Psyr_3477 0.10 -1.6 4,147,867 - Psyr_3477 0.10 +0.5 4,147,907 - Psyr_3477 0.13 +0.4 4,147,972 + Psyr_3477 0.16 +1.0 4,147,972 + Psyr_3477 0.16 +0.2 4,147,972 + Psyr_3477 0.16 +0.8 4,147,973 - Psyr_3477 0.16 +0.0 4,147,973 - Psyr_3477 0.16 +1.5 4,148,391 + Psyr_3477 0.40 +0.9 4,148,391 + Psyr_3477 0.40 +2.8 4,148,392 - Psyr_3477 0.40 -0.8 4,148,392 - Psyr_3477 0.40 -1.8 4,148,454 + Psyr_3477 0.44 -0.1 4,148,454 + Psyr_3477 0.44 +0.6 4,148,454 + Psyr_3477 0.44 +0.3 4,148,454 + Psyr_3477 0.44 -0.1 4,148,455 - Psyr_3477 0.44 -1.5 4,148,455 - Psyr_3477 0.44 -0.1 4,148,455 - Psyr_3477 0.44 +1.8 4,148,455 - Psyr_3477 0.44 +0.8 4,148,455 - Psyr_3477 0.44 +0.8 4,148,455 - Psyr_3477 0.44 -1.2 4,148,679 + Psyr_3477 0.57 -0.3 4,148,680 - Psyr_3477 0.57 +0.8 4,148,730 - Psyr_3477 0.60 +0.8 4,148,772 + Psyr_3477 0.62 +1.3 4,148,772 + Psyr_3477 0.62 -0.2 4,148,772 + Psyr_3477 0.62 +0.3 4,148,772 + Psyr_3477 0.62 +0.2 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 -0.8 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 -1.8 4,148,772 + Psyr_3477 0.62 -1.2 4,148,772 + Psyr_3477 0.62 -0.8 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 +0.7 4,148,772 + Psyr_3477 0.62 +1.1 4,148,772 + Psyr_3477 0.62 -1.7 4,148,772 + Psyr_3477 0.62 -0.6 4,148,772 + Psyr_3477 0.62 -0.2 4,148,772 + Psyr_3477 0.62 +1.0 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 +0.8 4,148,772 + Psyr_3477 0.62 -0.8 4,148,772 + Psyr_3477 0.62 -0.1 4,148,773 - Psyr_3477 0.62 +0.3 4,148,773 - Psyr_3477 0.62 -0.5 4,148,773 - Psyr_3477 0.62 +0.8 4,148,773 - Psyr_3477 0.62 +1.1 4,148,773 - Psyr_3477 0.62 +0.3 4,148,773 - Psyr_3477 0.62 +0.0 4,148,773 - Psyr_3477 0.62 +1.2 4,148,773 - Psyr_3477 0.62 -0.5 4,148,773 - Psyr_3477 0.62 +0.8 4,148,773 - Psyr_3477 0.62 +0.8 4,148,773 - Psyr_3477 0.62 -2.2 4,148,773 - Psyr_3477 0.62 -0.4 4,148,773 - Psyr_3477 0.62 +0.3 4,148,773 - Psyr_3477 0.62 +0.1 4,148,773 - Psyr_3477 0.62 -1.2 4,148,773 - Psyr_3477 0.62 +0.6 4,148,773 - Psyr_3477 0.62 +0.4 4,148,773 - Psyr_3477 0.62 +1.1 4,148,773 - Psyr_3477 0.62 +0.8 4,148,773 - Psyr_3477 0.62 +0.5 4,148,808 + Psyr_3477 0.64 +0.2 4,148,808 + Psyr_3477 0.64 +0.2 4,148,808 + Psyr_3477 0.64 -0.6 4,148,808 + Psyr_3477 0.64 +0.8 4,148,809 - Psyr_3477 0.64 +0.2 4,148,809 - Psyr_3477 0.64 +0.3 4,148,956 + Psyr_3477 0.72 -0.1 4,148,957 - Psyr_3477 0.73 +1.4 4,149,002 - Psyr_3477 0.75 -2.2 4,149,133 + Psyr_3477 0.83 +0.4 4,149,134 - Psyr_3477 0.83 -1.2 4,149,135 + Psyr_3477 0.83 +0.8 4,149,135 + Psyr_3477 0.83 -0.4 4,149,135 + Psyr_3477 0.83 +0.8 4,149,136 - Psyr_3477 0.83 +1.5 4,149,184 + Psyr_3477 0.86 -1.2 4,149,185 - Psyr_3477 0.86 +1.0 4,149,191 - Psyr_3477 0.86 -0.2 4,149,260 + Psyr_3477 0.90 +1.6 4,149,260 + Psyr_3477 0.90 -0.3 4,149,309 + +0.8 4,149,310 - -0.2 4,149,310 - +0.7 4,149,310 - -1.0 4,149,310 - -2.2 4,149,310 - +0.6 4,149,311 + -0.2 4,149,311 + +0.3 4,149,311 + +0.9 4,149,311 + -1.1 4,149,311 + +3.9 4,149,311 + -0.2 4,149,311 + +0.5 4,149,311 + +0.6 4,149,311 + +0.6 4,149,312 - -1.7 4,149,312 - +0.8 4,149,312 - +0.6 4,149,312 - -0.0 4,149,367 + +0.1 4,149,367 + -2.6 4,149,410 - +0.1 4,149,425 - -0.5 4,149,467 - +0.3 4,149,477 + +0.2 4,149,512 + -0.4 4,149,513 - -1.4 4,149,546 - +1.8 4,149,556 + -0.3 4,149,556 + -0.4 4,149,557 - -1.2 4,149,635 + +0.0 4,149,635 + +1.0 4,149,635 + +0.9 4,149,635 + -0.5 4,149,635 + +0.4 4,149,636 - +0.8 4,149,636 - -1.7 4,149,649 - +1.2 4,149,701 + -0.2 4,149,701 + +2.1 4,149,701 + +0.5 4,149,701 + -0.2 4,149,701 + +0.1 4,149,702 - +0.3 4,149,702 - -1.2 4,149,782 + Psyr_3478 0.11 +2.2 4,149,782 + Psyr_3478 0.11 -0.8 4,149,782 + Psyr_3478 0.11 +0.0 4,149,782 + Psyr_3478 0.11 +0.0 4,149,782 + Psyr_3478 0.11 -0.2 4,149,935 + Psyr_3478 0.23 -0.2 4,149,935 + Psyr_3478 0.23 +0.0 4,149,935 + Psyr_3478 0.23 +1.0 4,149,935 + Psyr_3478 0.23 +0.4 4,149,936 - Psyr_3478 0.23 -0.1 4,149,936 - Psyr_3478 0.23 +0.8 4,149,936 - Psyr_3478 0.23 -0.2 4,149,936 - Psyr_3478 0.23 +1.0 4,149,936 - Psyr_3478 0.23 -0.2 4,150,104 + Psyr_3478 0.35 +0.8 4,150,104 + Psyr_3478 0.35 +1.0 4,150,105 - Psyr_3478 0.35 -1.1 4,150,105 - Psyr_3478 0.35 +0.3 4,150,161 + Psyr_3478 0.40 +0.2 4,150,161 + Psyr_3478 0.40 +0.0 4,150,162 - Psyr_3478 0.40 -0.5 4,150,162 - Psyr_3478 0.40 +0.2 4,150,162 - Psyr_3478 0.40 +0.8 4,150,197 + Psyr_3478 0.42 -0.5 4,150,197 + Psyr_3478 0.42 +0.2 4,150,255 - Psyr_3478 0.47 +1.2 4,150,313 + Psyr_3478 0.51 -0.1 4,150,313 + Psyr_3478 0.51 +0.4 4,150,313 + Psyr_3478 0.51 +0.7 4,150,313 + Psyr_3478 0.51 -0.3 4,150,314 - Psyr_3478 0.51 -0.8 4,150,314 - Psyr_3478 0.51 +0.0 4,150,314 - Psyr_3478 0.51 +0.4 4,150,314 - Psyr_3478 0.51 -1.1 4,150,349 + Psyr_3478 0.54 +0.5 4,150,350 - Psyr_3478 0.54 +0.2 4,150,385 + Psyr_3478 0.57 +0.8 4,150,400 + Psyr_3478 0.58 +0.5 4,150,400 + Psyr_3478 0.58 -0.2 4,150,400 + Psyr_3478 0.58 -1.2 4,150,400 + Psyr_3478 0.58 -0.2 4,150,400 + Psyr_3478 0.58 +0.3 4,150,401 - Psyr_3478 0.58 +0.8 4,150,401 - Psyr_3478 0.58 -0.6 4,150,401 - Psyr_3478 0.58 +0.1 4,150,412 + Psyr_3478 0.59 +0.9 4,150,412 + Psyr_3478 0.59 -1.2 4,150,412 + Psyr_3478 0.59 +0.3 4,150,412 + Psyr_3478 0.59 -0.0 4,150,412 + Psyr_3478 0.59 -0.4 4,150,412 + Psyr_3478 0.59 -1.6 4,150,412 + Psyr_3478 0.59 -0.0 4,150,412 + Psyr_3478 0.59 +0.9 4,150,412 + Psyr_3478 0.59 -0.6 4,150,412 + Psyr_3478 0.59 -0.1 4,150,412 + Psyr_3478 0.59 -0.8 4,150,413 - Psyr_3478 0.59 +1.5 4,150,413 - Psyr_3478 0.59 +1.2 4,150,413 - Psyr_3478 0.59 +0.3 4,150,413 - Psyr_3478 0.59 +0.1 4,150,413 - Psyr_3478 0.59 -0.8 4,150,413 - Psyr_3478 0.59 +1.2 4,150,413 - Psyr_3478 0.59 -0.2 4,150,413 - Psyr_3478 0.59 -0.1 4,150,413 - Psyr_3478 0.59 -0.7 4,150,413 - Psyr_3478 0.59 +1.2 4,150,413 - Psyr_3478 0.59 +0.9 4,150,413 - Psyr_3478 0.59 -0.6 4,150,416 + Psyr_3478 0.59 +2.1 4,150,416 + Psyr_3478 0.59 -0.0 4,150,416 + Psyr_3478 0.59 +0.1 4,150,417 - Psyr_3478 0.59 -1.2
Or see this region's nucleotide sequence