Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3357

Experiment: KB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB
4,014,163	-		Psyr_3355	0.85	-0.4
4,014,163	-		Psyr_3355	0.85	-1.4
4,014,218	-		Psyr_3355	0.88	-1.2
4,014,364	+				-0.6
4,014,364	+				+0.7
4,014,365	-				+2.3
4,014,365	-				+0.6
4,014,365	-				+0.5
4,014,365	-				+1.3
4,014,370	+				-0.8
4,014,371	-				-0.7
4,014,397	+				-1.4
4,014,397	+				-0.1
4,014,397	+				-0.3
4,014,398	-				-0.1
4,014,398	-				+1.7
4,014,594	+				+2.3
4,014,595	-				+0.0
4,014,595	-				-0.8
4,014,595	-				-0.1
4,014,676	-				-1.6
4,014,723	+				-0.3
4,014,724	-				-0.9
4,014,995	-				-1.3
4,015,090	+				+0.7
4,015,090	+				+1.8
4,015,091	-				+0.2
4,015,092	+				-3.0
4,015,376	+		Psyr_3357	0.24	-1.3
4,015,376	+		Psyr_3357	0.24	-3.5
4,015,376	+		Psyr_3357	0.24	-0.3
4,015,377	-		Psyr_3357	0.24	-1.4
4,015,450	-		Psyr_3357	0.33	-1.4
4,015,450	-		Psyr_3357	0.33	+0.5
4,016,040	-				-1.3
4,016,040	-				-0.3
4,016,141	+				+0.4
4,016,141	+				-0.3
4,016,141	+				+0.7
4,016,141	+				+0.7
4,016,141	+				-0.1
4,016,141	+				-0.3
4,016,141	+				+1.0
4,016,141	+				+0.5
4,016,141	+				-0.0
4,016,142	-				-0.0
4,016,142	-				-0.5
4,016,142	-				+1.2
4,016,142	-				+0.7
4,016,142	-				+2.7
4,016,142	-				-1.6
4,016,145	+				-0.5
4,016,146	-				+0.2
4,016,152	-				+0.2
4,016,353	+		Psyr_3358	0.43	+1.1
4,016,353	+		Psyr_3358	0.43	-0.9
4,016,354	-		Psyr_3358	0.43	+0.7
4,016,354	-		Psyr_3358	0.43	+0.7
4,016,484	+		Psyr_3358	0.70	+0.0
4,016,546	-		Psyr_3358	0.83	+0.0
4,016,623	+				+1.0
4,016,623	+				-0.3
4,016,624	-				+0.7
4,016,624	-				+0.1
4,016,624	-				-0.9
4,016,624	-				-0.0
4,016,703	-				-0.3
4,016,725	-				+0.7
4,016,725	-				+1.1
4,016,725	-				-0.4
4,016,725	-				-2.6
4,016,725	-				+0.1
4,016,725	-				+1.7
4,016,741	+				+1.1
4,016,741	+				-1.0
4,016,741	+				+0.5