Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2791

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2789 and Psyr_2790 are separated by 12 nucleotidesPsyr_2790 and Psyr_2791 are separated by 83 nucleotidesPsyr_2791 and Psyr_2792 are separated by 25 nucleotides Psyr_2789: Psyr_2789 - conserved hypothetical protein, at 3,372,652 to 3,373,602 _2789 Psyr_2790: Psyr_2790 - conserved hypothetical protein, at 3,373,615 to 3,374,343 _2790 Psyr_2791: Psyr_2791 - hypothetical protein, at 3,374,427 to 3,374,903 _2791 Psyr_2792: Psyr_2792 - Phage putative head morphogenesis protein, SPP1 gp7, at 3,374,929 to 3,376,017 _2792 Position (kb) 3374 3375Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3373.436 kb on + strand, within Psyr_2789at 3373.437 kb on - strand, within Psyr_2789at 3373.437 kb on - strand, within Psyr_2789at 3373.437 kb on - strand, within Psyr_2789at 3373.544 kb on + strandat 3373.544 kb on + strandat 3373.545 kb on - strandat 3373.569 kb on - strandat 3373.569 kb on - strandat 3373.569 kb on - strandat 3373.569 kb on - strandat 3373.616 kb on + strandat 3373.616 kb on + strandat 3373.661 kb on + strandat 3374.051 kb on + strand, within Psyr_2790at 3374.051 kb on + strandat 3374.052 kb on - strand, within Psyr_2790at 3374.083 kb on - strand, within Psyr_2790at 3374.109 kb on + strand, within Psyr_2790at 3374.110 kb on - strand, within Psyr_2790at 3374.110 kb on - strand, within Psyr_2790at 3374.366 kb on + strandat 3374.367 kb on - strandat 3374.492 kb on + strandat 3374.496 kb on + strand, within Psyr_2791at 3374.626 kb on + strand, within Psyr_2791at 3374.626 kb on + strand, within Psyr_2791at 3374.627 kb on - strand, within Psyr_2791at 3374.627 kb on - strand, within Psyr_2791at 3374.649 kb on - strand, within Psyr_2791at 3374.748 kb on - strand, within Psyr_2791at 3374.808 kb on + strand, within Psyr_2791at 3374.826 kb on + strand, within Psyr_2791at 3374.835 kb on - strand, within Psyr_2791at 3374.836 kb on + strand, within Psyr_2791at 3374.836 kb on + strand, within Psyr_2791at 3374.841 kb on - strand, within Psyr_2791at 3374.841 kb on - strand, within Psyr_2791at 3374.936 kb on - strandat 3375.004 kb on - strandat 3375.011 kb on - strandat 3375.034 kb on + strandat 3375.034 kb on + strandat 3375.035 kb on - strandat 3375.035 kb on - strandat 3375.125 kb on + strand, within Psyr_2792at 3375.125 kb on + strand, within Psyr_2792at 3375.126 kb on - strand, within Psyr_2792at 3375.126 kb on - strand, within Psyr_2792at 3375.128 kb on + strand, within Psyr_2792at 3375.128 kb on + strand, within Psyr_2792at 3375.129 kb on - strand, within Psyr_2792at 3375.129 kb on - strand, within Psyr_2792at 3375.303 kb on + strand, within Psyr_2792at 3375.303 kb on + strand, within Psyr_2792at 3375.303 kb on + strand, within Psyr_2792at 3375.304 kb on - strand, within Psyr_2792at 3375.428 kb on - strand, within Psyr_2792at 3375.473 kb on + strand, within Psyr_2792at 3375.699 kb on + strand, within Psyr_2792at 3375.752 kb on + strand, within Psyr_2792at 3375.752 kb on + strand, within Psyr_2792at 3375.753 kb on - strand, within Psyr_2792at 3375.753 kb on - strand, within Psyr_2792at 3375.792 kb on + strand, within Psyr_2792at 3375.792 kb on + strand, within Psyr_2792at 3375.795 kb on - strand, within Psyr_2792at 3375.864 kb on - strand, within Psyr_2792

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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3,373,436 + Psyr_2789 0.82 +0.8
3,373,437 - Psyr_2789 0.83 +3.0
3,373,437 - Psyr_2789 0.83 -0.2
3,373,437 - Psyr_2789 0.83 +2.4
3,373,544 + +0.2
3,373,544 + +0.2
3,373,545 - -0.9
3,373,569 - +0.1
3,373,569 - -0.6
3,373,569 - +1.7
3,373,569 - -0.1
3,373,616 + -0.4
3,373,616 + +0.2
3,373,661 + -0.3
3,374,051 + Psyr_2790 0.60 -0.3
3,374,051 + +1.7
3,374,052 - Psyr_2790 0.60 -0.3
3,374,083 - Psyr_2790 0.64 -0.6
3,374,109 + Psyr_2790 0.68 -0.0
3,374,110 - Psyr_2790 0.68 +1.0
3,374,110 - Psyr_2790 0.68 +0.3
3,374,366 + -2.5
3,374,367 - -0.2
3,374,492 + -0.3
3,374,496 + Psyr_2791 0.14 -2.5
3,374,626 + Psyr_2791 0.42 +0.7
3,374,626 + Psyr_2791 0.42 -1.3
3,374,627 - Psyr_2791 0.42 -0.2
3,374,627 - Psyr_2791 0.42 -0.6
3,374,649 - Psyr_2791 0.47 +0.4
3,374,748 - Psyr_2791 0.67 -1.6
3,374,808 + Psyr_2791 0.80 -3.4
3,374,826 + Psyr_2791 0.84 +0.7
3,374,835 - Psyr_2791 0.86 -0.3
3,374,836 + Psyr_2791 0.86 +0.7
3,374,836 + Psyr_2791 0.86 -0.5
3,374,841 - Psyr_2791 0.87 -1.0
3,374,841 - Psyr_2791 0.87 +0.3
3,374,936 - -0.7
3,375,004 - +0.2
3,375,011 - +0.7
3,375,034 + -0.4
3,375,034 + +1.0
3,375,035 - +0.1
3,375,035 - -0.8
3,375,125 + Psyr_2792 0.18 -0.3
3,375,125 + Psyr_2792 0.18 -0.9
3,375,126 - Psyr_2792 0.18 -0.3
3,375,126 - Psyr_2792 0.18 +0.5
3,375,128 + Psyr_2792 0.18 +1.4
3,375,128 + Psyr_2792 0.18 -0.2
3,375,129 - Psyr_2792 0.18 -0.9
3,375,129 - Psyr_2792 0.18 +0.4
3,375,303 + Psyr_2792 0.34 -0.5
3,375,303 + Psyr_2792 0.34 +1.9
3,375,303 + Psyr_2792 0.34 -2.1
3,375,304 - Psyr_2792 0.34 +0.7
3,375,428 - Psyr_2792 0.46 -0.1
3,375,473 + Psyr_2792 0.50 +0.1
3,375,699 + Psyr_2792 0.71 -0.1
3,375,752 + Psyr_2792 0.76 -0.2
3,375,752 + Psyr_2792 0.76 +0.0
3,375,753 - Psyr_2792 0.76 +0.2
3,375,753 - Psyr_2792 0.76 +1.0
3,375,792 + Psyr_2792 0.79 +0.7
3,375,792 + Psyr_2792 0.79 +0.8
3,375,795 - Psyr_2792 0.80 -0.9
3,375,864 - Psyr_2792 0.86 +1.2

Or see this region's nucleotide sequence