Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2622 and Psyr_2623 are separated by 70 nucleotides Psyr_2623 and Psyr_2624 are separated by 55 nucleotides Psyr_2624 and Psyr_2625 are separated by 7 nucleotides
Psyr_2622: Psyr_2622 - Acriflavin resistance protein, at 3,179,878 to 3,182,922
_2622
Psyr_2623: Psyr_2623 - conserved hypothetical protein, at 3,182,993 to 3,184,252
_2623
Psyr_2624: Psyr_2624 - lipoprotein, putative, at 3,184,308 to 3,184,808
_2624
Psyr_2625: Psyr_2625 - lipoprotein, putative, at 3,184,816 to 3,185,553
_2625
Position (kb)
3182
3183
3184
3185 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3182.168 kb on + strand, within Psyr_2622 at 3182.168 kb on + strand, within Psyr_2622 at 3182.169 kb on - strand, within Psyr_2622 at 3182.244 kb on + strand at 3182.244 kb on + strand, within Psyr_2622 at 3182.245 kb on - strand, within Psyr_2622 at 3182.339 kb on + strand, within Psyr_2622 at 3182.340 kb on - strand, within Psyr_2622 at 3182.424 kb on + strand, within Psyr_2622 at 3182.424 kb on + strand, within Psyr_2622 at 3182.424 kb on + strand, within Psyr_2622 at 3182.425 kb on - strand, within Psyr_2622 at 3182.425 kb on - strand, within Psyr_2622 at 3182.425 kb on - strand, within Psyr_2622 at 3182.425 kb on - strand, within Psyr_2622 at 3182.425 kb on - strand, within Psyr_2622 at 3182.426 kb on + strand, within Psyr_2622 at 3182.427 kb on - strand, within Psyr_2622 at 3182.428 kb on + strand, within Psyr_2622 at 3182.460 kb on + strand, within Psyr_2622 at 3182.461 kb on - strand, within Psyr_2622 at 3182.822 kb on + strand at 3182.823 kb on - strand at 3182.825 kb on + strand at 3182.825 kb on + strand at 3182.826 kb on - strand at 3182.826 kb on - strand at 3182.853 kb on + strand at 3182.853 kb on + strand at 3182.857 kb on + strand at 3182.857 kb on + strand at 3182.858 kb on - strand at 3183.072 kb on - strand at 3183.096 kb on + strand at 3183.097 kb on - strand at 3183.098 kb on + strand at 3183.098 kb on + strand at 3183.098 kb on + strand at 3183.099 kb on - strand at 3183.099 kb on - strand at 3183.099 kb on - strand at 3183.099 kb on - strand at 3183.099 kb on - strand at 3183.301 kb on + strand, within Psyr_2623 at 3183.565 kb on - strand, within Psyr_2623 at 3183.565 kb on - strand, within Psyr_2623 at 3183.592 kb on + strand, within Psyr_2623 at 3183.673 kb on - strand, within Psyr_2623 at 3183.673 kb on - strand, within Psyr_2623 at 3183.673 kb on - strand, within Psyr_2623 at 3183.677 kb on - strand, within Psyr_2623 at 3183.740 kb on + strand, within Psyr_2623 at 3183.741 kb on - strand, within Psyr_2623 at 3183.741 kb on - strand, within Psyr_2623 at 3183.743 kb on + strand, within Psyr_2623 at 3183.744 kb on - strand, within Psyr_2623 at 3183.764 kb on + strand, within Psyr_2623 at 3183.904 kb on + strand, within Psyr_2623 at 3183.904 kb on + strand, within Psyr_2623 at 3183.904 kb on + strand, within Psyr_2623 at 3183.905 kb on - strand, within Psyr_2623 at 3183.906 kb on + strand, within Psyr_2623 at 3183.907 kb on - strand, within Psyr_2623 at 3183.949 kb on + strand, within Psyr_2623 at 3183.968 kb on - strand, within Psyr_2623 at 3184.298 kb on + strand at 3184.302 kb on + strand at 3184.303 kb on - strand at 3184.327 kb on - strand at 3184.327 kb on - strand at 3184.327 kb on - strand at 3184.327 kb on - strand at 3184.597 kb on + strand, within Psyr_2624 at 3184.799 kb on + strand at 3184.802 kb on + strand at 3184.803 kb on - strand at 3184.848 kb on - strand at 3184.938 kb on + strand, within Psyr_2625 at 3184.970 kb on + strand, within Psyr_2625 at 3184.970 kb on + strand, within Psyr_2625 at 3184.979 kb on - strand, within Psyr_2625 at 3185.007 kb on + strand, within Psyr_2625 at 3185.144 kb on + strand, within Psyr_2625 at 3185.144 kb on + strand, within Psyr_2625 at 3185.145 kb on - strand, within Psyr_2625 at 3185.145 kb on - strand, within Psyr_2625 at 3185.145 kb on - strand, within Psyr_2625 at 3185.148 kb on + strand, within Psyr_2625 at 3185.149 kb on - strand, within Psyr_2625 at 3185.179 kb on + strand, within Psyr_2625 at 3185.222 kb on + strand, within Psyr_2625 at 3185.222 kb on + strand, within Psyr_2625 at 3185.223 kb on - strand, within Psyr_2625 at 3185.243 kb on + strand, within Psyr_2625 at 3185.243 kb on + strand, within Psyr_2625 at 3185.243 kb on + strand, within Psyr_2625 at 3185.244 kb on - strand, within Psyr_2625 at 3185.246 kb on + strand, within Psyr_2625 at 3185.246 kb on + strand, within Psyr_2625 at 3185.249 kb on + strand, within Psyr_2625 at 3185.249 kb on + strand, within Psyr_2625 at 3185.249 kb on + strand, within Psyr_2625 at 3185.249 kb on + strand, within Psyr_2625 at 3185.249 kb on + strand, within Psyr_2625 at 3185.250 kb on - strand, within Psyr_2625 at 3185.250 kb on - strand, within Psyr_2625
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 3,182,168 + Psyr_2622 0.75 -0.1 3,182,168 + Psyr_2622 0.75 -0.4 3,182,169 - Psyr_2622 0.75 +0.0 3,182,244 + +2.2 3,182,244 + Psyr_2622 0.78 +0.6 3,182,245 - Psyr_2622 0.78 +0.4 3,182,339 + Psyr_2622 0.81 -0.2 3,182,340 - Psyr_2622 0.81 +2.2 3,182,424 + Psyr_2622 0.84 -0.4 3,182,424 + Psyr_2622 0.84 +0.8 3,182,424 + Psyr_2622 0.84 -0.6 3,182,425 - Psyr_2622 0.84 -2.4 3,182,425 - Psyr_2622 0.84 -0.4 3,182,425 - Psyr_2622 0.84 +2.0 3,182,425 - Psyr_2622 0.84 +1.0 3,182,425 - Psyr_2622 0.84 -1.7 3,182,426 + Psyr_2622 0.84 +1.0 3,182,427 - Psyr_2622 0.84 +1.0 3,182,428 + Psyr_2622 0.84 +3.4 3,182,460 + Psyr_2622 0.85 -1.2 3,182,461 - Psyr_2622 0.85 +0.4 3,182,822 + -1.4 3,182,823 - -1.7 3,182,825 + -0.5 3,182,825 + -0.9 3,182,826 - +0.6 3,182,826 - -0.2 3,182,853 + -0.4 3,182,853 + -0.2 3,182,857 + -0.1 3,182,857 + +1.2 3,182,858 - -1.0 3,183,072 - -1.0 3,183,096 + -0.7 3,183,097 - -0.4 3,183,098 + -0.3 3,183,098 + -0.3 3,183,098 + +0.0 3,183,099 - +0.3 3,183,099 - +1.2 3,183,099 - +0.6 3,183,099 - -0.6 3,183,099 - -0.4 3,183,301 + Psyr_2623 0.24 -0.5 3,183,565 - Psyr_2623 0.45 -0.4 3,183,565 - Psyr_2623 0.45 -0.5 3,183,592 + Psyr_2623 0.48 -2.5 3,183,673 - Psyr_2623 0.54 +1.6 3,183,673 - Psyr_2623 0.54 -2.8 3,183,673 - Psyr_2623 0.54 -1.4 3,183,677 - Psyr_2623 0.54 +0.1 3,183,740 + Psyr_2623 0.59 -0.5 3,183,741 - Psyr_2623 0.59 -1.0 3,183,741 - Psyr_2623 0.59 -0.2 3,183,743 + Psyr_2623 0.60 -0.1 3,183,744 - Psyr_2623 0.60 +0.0 3,183,764 + Psyr_2623 0.61 +0.2 3,183,904 + Psyr_2623 0.72 -1.4 3,183,904 + Psyr_2623 0.72 -0.7 3,183,904 + Psyr_2623 0.72 +1.1 3,183,905 - Psyr_2623 0.72 -0.8 3,183,906 + Psyr_2623 0.72 -1.2 3,183,907 - Psyr_2623 0.73 +0.2 3,183,949 + Psyr_2623 0.76 -1.0 3,183,968 - Psyr_2623 0.77 -1.4 3,184,298 + +0.6 3,184,302 + -1.1 3,184,303 - +0.6 3,184,327 - +0.6 3,184,327 - -0.0 3,184,327 - +0.2 3,184,327 - +0.8 3,184,597 + Psyr_2624 0.58 +1.0 3,184,799 + -0.6 3,184,802 + -1.3 3,184,803 - +0.2 3,184,848 - +1.4 3,184,938 + Psyr_2625 0.17 -0.1 3,184,970 + Psyr_2625 0.21 -0.0 3,184,970 + Psyr_2625 0.21 +0.2 3,184,979 - Psyr_2625 0.22 -0.3 3,185,007 + Psyr_2625 0.26 +1.0 3,185,144 + Psyr_2625 0.44 +2.0 3,185,144 + Psyr_2625 0.44 -0.5 3,185,145 - Psyr_2625 0.45 +0.8 3,185,145 - Psyr_2625 0.45 +0.3 3,185,145 - Psyr_2625 0.45 -0.2 3,185,148 + Psyr_2625 0.45 -0.0 3,185,149 - Psyr_2625 0.45 -1.0 3,185,179 + Psyr_2625 0.49 -0.1 3,185,222 + Psyr_2625 0.55 +0.8 3,185,222 + Psyr_2625 0.55 -1.0 3,185,223 - Psyr_2625 0.55 +2.2 3,185,243 + Psyr_2625 0.58 -0.0 3,185,243 + Psyr_2625 0.58 +0.9 3,185,243 + Psyr_2625 0.58 -0.4 3,185,244 - Psyr_2625 0.58 +0.5 3,185,246 + Psyr_2625 0.58 -0.4 3,185,246 + Psyr_2625 0.58 -1.1 3,185,249 + Psyr_2625 0.59 +0.6 3,185,249 + Psyr_2625 0.59 -0.2 3,185,249 + Psyr_2625 0.59 -1.8 3,185,249 + Psyr_2625 0.59 +0.5 3,185,249 + Psyr_2625 0.59 -0.4 3,185,250 - Psyr_2625 0.59 -0.5 3,185,250 - Psyr_2625 0.59 -1.7
Or see this region's nucleotide sequence