Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2623

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2622 and Psyr_2623 are separated by 70 nucleotidesPsyr_2623 and Psyr_2624 are separated by 55 nucleotidesPsyr_2624 and Psyr_2625 are separated by 7 nucleotides Psyr_2622: Psyr_2622 - Acriflavin resistance protein, at 3,179,878 to 3,182,922 _2622 Psyr_2623: Psyr_2623 - conserved hypothetical protein, at 3,182,993 to 3,184,252 _2623 Psyr_2624: Psyr_2624 - lipoprotein, putative, at 3,184,308 to 3,184,808 _2624 Psyr_2625: Psyr_2625 - lipoprotein, putative, at 3,184,816 to 3,185,553 _2625 Position (kb) 3182 3183 3184 3185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3182.168 kb on + strand, within Psyr_2622at 3182.168 kb on + strand, within Psyr_2622at 3182.169 kb on - strand, within Psyr_2622at 3182.244 kb on + strandat 3182.244 kb on + strand, within Psyr_2622at 3182.245 kb on - strand, within Psyr_2622at 3182.339 kb on + strand, within Psyr_2622at 3182.340 kb on - strand, within Psyr_2622at 3182.424 kb on + strand, within Psyr_2622at 3182.424 kb on + strand, within Psyr_2622at 3182.424 kb on + strand, within Psyr_2622at 3182.425 kb on - strand, within Psyr_2622at 3182.425 kb on - strand, within Psyr_2622at 3182.425 kb on - strand, within Psyr_2622at 3182.425 kb on - strand, within Psyr_2622at 3182.425 kb on - strand, within Psyr_2622at 3182.426 kb on + strand, within Psyr_2622at 3182.427 kb on - strand, within Psyr_2622at 3182.428 kb on + strand, within Psyr_2622at 3182.460 kb on + strand, within Psyr_2622at 3182.461 kb on - strand, within Psyr_2622at 3182.822 kb on + strandat 3182.823 kb on - strandat 3182.825 kb on + strandat 3182.825 kb on + strandat 3182.826 kb on - strandat 3182.826 kb on - strandat 3182.853 kb on + strandat 3182.853 kb on + strandat 3182.857 kb on + strandat 3182.857 kb on + strandat 3182.858 kb on - strandat 3183.072 kb on - strandat 3183.096 kb on + strandat 3183.097 kb on - strandat 3183.098 kb on + strandat 3183.098 kb on + strandat 3183.098 kb on + strandat 3183.099 kb on - strandat 3183.099 kb on - strandat 3183.099 kb on - strandat 3183.099 kb on - strandat 3183.099 kb on - strandat 3183.301 kb on + strand, within Psyr_2623at 3183.565 kb on - strand, within Psyr_2623at 3183.565 kb on - strand, within Psyr_2623at 3183.592 kb on + strand, within Psyr_2623at 3183.673 kb on - strand, within Psyr_2623at 3183.673 kb on - strand, within Psyr_2623at 3183.673 kb on - strand, within Psyr_2623at 3183.677 kb on - strand, within Psyr_2623at 3183.740 kb on + strand, within Psyr_2623at 3183.741 kb on - strand, within Psyr_2623at 3183.741 kb on - strand, within Psyr_2623at 3183.743 kb on + strand, within Psyr_2623at 3183.744 kb on - strand, within Psyr_2623at 3183.764 kb on + strand, within Psyr_2623at 3183.904 kb on + strand, within Psyr_2623at 3183.904 kb on + strand, within Psyr_2623at 3183.904 kb on + strand, within Psyr_2623at 3183.905 kb on - strand, within Psyr_2623at 3183.906 kb on + strand, within Psyr_2623at 3183.907 kb on - strand, within Psyr_2623at 3183.949 kb on + strand, within Psyr_2623at 3183.968 kb on - strand, within Psyr_2623at 3184.298 kb on + strandat 3184.302 kb on + strandat 3184.303 kb on - strandat 3184.327 kb on - strandat 3184.327 kb on - strandat 3184.327 kb on - strandat 3184.327 kb on - strandat 3184.597 kb on + strand, within Psyr_2624at 3184.799 kb on + strandat 3184.802 kb on + strandat 3184.803 kb on - strandat 3184.848 kb on - strandat 3184.938 kb on + strand, within Psyr_2625at 3184.970 kb on + strand, within Psyr_2625at 3184.970 kb on + strand, within Psyr_2625at 3184.979 kb on - strand, within Psyr_2625at 3185.007 kb on + strand, within Psyr_2625at 3185.144 kb on + strand, within Psyr_2625at 3185.144 kb on + strand, within Psyr_2625at 3185.145 kb on - strand, within Psyr_2625at 3185.145 kb on - strand, within Psyr_2625at 3185.145 kb on - strand, within Psyr_2625at 3185.148 kb on + strand, within Psyr_2625at 3185.149 kb on - strand, within Psyr_2625at 3185.179 kb on + strand, within Psyr_2625at 3185.222 kb on + strand, within Psyr_2625at 3185.222 kb on + strand, within Psyr_2625at 3185.223 kb on - strand, within Psyr_2625at 3185.243 kb on + strand, within Psyr_2625at 3185.243 kb on + strand, within Psyr_2625at 3185.243 kb on + strand, within Psyr_2625at 3185.244 kb on - strand, within Psyr_2625at 3185.246 kb on + strand, within Psyr_2625at 3185.246 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.250 kb on - strand, within Psyr_2625at 3185.250 kb on - strand, within Psyr_2625

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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3,182,168 + Psyr_2622 0.75 -0.1
3,182,168 + Psyr_2622 0.75 -0.4
3,182,169 - Psyr_2622 0.75 +0.0
3,182,244 + +2.2
3,182,244 + Psyr_2622 0.78 +0.6
3,182,245 - Psyr_2622 0.78 +0.4
3,182,339 + Psyr_2622 0.81 -0.2
3,182,340 - Psyr_2622 0.81 +2.2
3,182,424 + Psyr_2622 0.84 -0.4
3,182,424 + Psyr_2622 0.84 +0.8
3,182,424 + Psyr_2622 0.84 -0.6
3,182,425 - Psyr_2622 0.84 -2.4
3,182,425 - Psyr_2622 0.84 -0.4
3,182,425 - Psyr_2622 0.84 +2.0
3,182,425 - Psyr_2622 0.84 +1.0
3,182,425 - Psyr_2622 0.84 -1.7
3,182,426 + Psyr_2622 0.84 +1.0
3,182,427 - Psyr_2622 0.84 +1.0
3,182,428 + Psyr_2622 0.84 +3.4
3,182,460 + Psyr_2622 0.85 -1.2
3,182,461 - Psyr_2622 0.85 +0.4
3,182,822 + -1.4
3,182,823 - -1.7
3,182,825 + -0.5
3,182,825 + -0.9
3,182,826 - +0.6
3,182,826 - -0.2
3,182,853 + -0.4
3,182,853 + -0.2
3,182,857 + -0.1
3,182,857 + +1.2
3,182,858 - -1.0
3,183,072 - -1.0
3,183,096 + -0.7
3,183,097 - -0.4
3,183,098 + -0.3
3,183,098 + -0.3
3,183,098 + +0.0
3,183,099 - +0.3
3,183,099 - +1.2
3,183,099 - +0.6
3,183,099 - -0.6
3,183,099 - -0.4
3,183,301 + Psyr_2623 0.24 -0.5
3,183,565 - Psyr_2623 0.45 -0.4
3,183,565 - Psyr_2623 0.45 -0.5
3,183,592 + Psyr_2623 0.48 -2.5
3,183,673 - Psyr_2623 0.54 +1.6
3,183,673 - Psyr_2623 0.54 -2.8
3,183,673 - Psyr_2623 0.54 -1.4
3,183,677 - Psyr_2623 0.54 +0.1
3,183,740 + Psyr_2623 0.59 -0.5
3,183,741 - Psyr_2623 0.59 -1.0
3,183,741 - Psyr_2623 0.59 -0.2
3,183,743 + Psyr_2623 0.60 -0.1
3,183,744 - Psyr_2623 0.60 +0.0
3,183,764 + Psyr_2623 0.61 +0.2
3,183,904 + Psyr_2623 0.72 -1.4
3,183,904 + Psyr_2623 0.72 -0.7
3,183,904 + Psyr_2623 0.72 +1.1
3,183,905 - Psyr_2623 0.72 -0.8
3,183,906 + Psyr_2623 0.72 -1.2
3,183,907 - Psyr_2623 0.73 +0.2
3,183,949 + Psyr_2623 0.76 -1.0
3,183,968 - Psyr_2623 0.77 -1.4
3,184,298 + +0.6
3,184,302 + -1.1
3,184,303 - +0.6
3,184,327 - +0.6
3,184,327 - -0.0
3,184,327 - +0.2
3,184,327 - +0.8
3,184,597 + Psyr_2624 0.58 +1.0
3,184,799 + -0.6
3,184,802 + -1.3
3,184,803 - +0.2
3,184,848 - +1.4
3,184,938 + Psyr_2625 0.17 -0.1
3,184,970 + Psyr_2625 0.21 -0.0
3,184,970 + Psyr_2625 0.21 +0.2
3,184,979 - Psyr_2625 0.22 -0.3
3,185,007 + Psyr_2625 0.26 +1.0
3,185,144 + Psyr_2625 0.44 +2.0
3,185,144 + Psyr_2625 0.44 -0.5
3,185,145 - Psyr_2625 0.45 +0.8
3,185,145 - Psyr_2625 0.45 +0.3
3,185,145 - Psyr_2625 0.45 -0.2
3,185,148 + Psyr_2625 0.45 -0.0
3,185,149 - Psyr_2625 0.45 -1.0
3,185,179 + Psyr_2625 0.49 -0.1
3,185,222 + Psyr_2625 0.55 +0.8
3,185,222 + Psyr_2625 0.55 -1.0
3,185,223 - Psyr_2625 0.55 +2.2
3,185,243 + Psyr_2625 0.58 -0.0
3,185,243 + Psyr_2625 0.58 +0.9
3,185,243 + Psyr_2625 0.58 -0.4
3,185,244 - Psyr_2625 0.58 +0.5
3,185,246 + Psyr_2625 0.58 -0.4
3,185,246 + Psyr_2625 0.58 -1.1
3,185,249 + Psyr_2625 0.59 +0.6
3,185,249 + Psyr_2625 0.59 -0.2
3,185,249 + Psyr_2625 0.59 -1.8
3,185,249 + Psyr_2625 0.59 +0.5
3,185,249 + Psyr_2625 0.59 -0.4
3,185,250 - Psyr_2625 0.59 -0.5
3,185,250 - Psyr_2625 0.59 -1.7

Or see this region's nucleotide sequence