Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2170

Experiment: KB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB
2,522,374	+				+1.3
2,522,419	+		Psyr_2168	0.13	+1.1
2,522,439	+		Psyr_2168	0.19	+1.3
2,522,503	-		Psyr_2168	0.41	-2.1
2,522,662	+				-0.3
2,522,662	+				-2.1
2,522,662	+				-0.1
2,522,662	+				+1.3
2,522,663	-				-0.6
2,522,663	-				-0.9
2,522,680	+				+0.8
2,522,680	+				+0.1
2,522,714	+		Psyr_2169	0.14	-0.9
2,522,714	+		Psyr_2169	0.14	-0.6
2,522,715	-		Psyr_2169	0.15	-0.8
2,522,715	-		Psyr_2169	0.15	+0.9
2,522,771	+		Psyr_2169	0.30	+0.1
2,522,877	+		Psyr_2169	0.60	-0.1
2,522,877	+		Psyr_2169	0.60	-0.4
2,522,878	-		Psyr_2169	0.60	-1.0
2,522,879	+				+1.3
2,522,880	-		Psyr_2169	0.61	-0.6
2,522,880	-		Psyr_2169	0.61	+1.0
2,522,954	+		Psyr_2169	0.82	+0.3
2,522,954	+		Psyr_2169	0.82	+1.5
2,522,955	-		Psyr_2169	0.82	-1.7
2,522,955	-		Psyr_2169	0.82	+0.4
2,522,955	-		Psyr_2169	0.82	+0.7
2,522,997	+				-0.3
2,522,997	+				-0.3
2,522,998	-				-0.1
2,522,998	-				-2.1
2,522,998	-				-0.3
2,523,063	-				-0.8
2,523,096	+				-0.3
2,523,096	+				+0.7
2,523,097	-				-2.5
2,523,186	-				-0.3
2,523,187	+				-2.3
2,523,188	-				-1.3
2,523,188	-				-2.3
2,523,288	-				+1.3
2,523,454	-		Psyr_2170	0.12	-0.3
2,523,463	-		Psyr_2170	0.13	-0.5
2,523,467	+		Psyr_2170	0.14	-0.7
2,523,468	-		Psyr_2170	0.14	+0.9
2,523,504	+		Psyr_2170	0.18	-2.1
2,523,505	-		Psyr_2170	0.18	+1.7
2,523,505	-		Psyr_2170	0.18	-3.0
2,523,505	-		Psyr_2170	0.18	-1.3
2,523,563	+		Psyr_2170	0.24	-1.1
2,523,563	+		Psyr_2170	0.24	-0.3
2,523,564	-		Psyr_2170	0.24	-0.6
2,523,657	+		Psyr_2170	0.34	-0.1
2,523,658	-		Psyr_2170	0.34	-1.5
2,523,658	-		Psyr_2170	0.34	+0.2
2,523,692	+		Psyr_2170	0.38	-0.9
2,523,693	-		Psyr_2170	0.38	-1.8
2,523,721	+		Psyr_2170	0.41	-0.1
2,523,721	+		Psyr_2170	0.41	-0.9
2,523,721	+		Psyr_2170	0.41	-1.3
2,523,790	-		Psyr_2170	0.49	-0.2
2,523,797	-		Psyr_2170	0.50	+0.2
2,523,831	-		Psyr_2170	0.53	-0.5
2,523,831	-		Psyr_2170	0.53	-0.6
2,523,995	+		Psyr_2170	0.71	+1.7
2,523,995	+		Psyr_2170	0.71	-0.3
2,523,996	-		Psyr_2170	0.71	-2.1
2,523,996	-		Psyr_2170	0.71	-0.5
2,524,000	+		Psyr_2170	0.72	-0.3
2,524,000	+		Psyr_2170	0.72	+0.0
2,524,000	+		Psyr_2170	0.72	+0.8
2,524,001	-		Psyr_2170	0.72	+0.5
2,524,071	-		Psyr_2170	0.80	+0.4
2,524,101	+		Psyr_2170	0.83	-0.6
2,524,102	-		Psyr_2170	0.83	-0.3
2,524,102	-		Psyr_2170	0.83	+0.4
2,524,102	-		Psyr_2170	0.83	-1.6
2,524,103	+		Psyr_2170	0.83	-2.0
2,524,103	+				-0.9
2,524,103	+		Psyr_2170	0.83	-0.8
2,524,103	+		Psyr_2170	0.83	+1.7
2,524,103	+		Psyr_2170	0.83	+0.3
2,524,103	+		Psyr_2170	0.83	-1.8
2,524,103	+		Psyr_2170	0.83	+1.3
2,524,104	-		Psyr_2170	0.83	+1.5
2,524,104	-		Psyr_2170	0.83	-1.2
2,524,104	-		Psyr_2170	0.83	+0.1
2,524,104	-		Psyr_2170	0.83	+0.3
2,524,104	-		Psyr_2170	0.83	+0.4
2,524,104	-		Psyr_2170	0.83	+1.9
2,524,104	-		Psyr_2170	0.83	-1.8
2,524,104	-		Psyr_2170	0.83	+0.1
2,524,104	-		Psyr_2170	0.83	-0.3
2,524,203	+				+0.5
2,524,203	+				-0.0
2,524,203	+				-0.7
2,524,204	-				+1.8
2,524,204	-				-2.1
2,524,206	+				-2.6
2,524,206	+				+0.4
2,524,206	+				+0.3
2,524,206	+				-0.5
2,524,206	+				-0.9
2,524,207	-				-0.7
2,524,207	-				-1.5
2,524,207	-				-1.4
2,524,207	-				+1.7
2,524,207	-				-1.1
2,524,210	+				+0.1
2,524,210	+				-0.3
2,524,211	-				+0.7
2,524,251	+				-0.9
2,524,273	-				+0.5
2,524,456	+				-0.6
2,524,601	+				-0.2
2,524,601	+				+0.8
2,524,602	-				-2.3
2,524,602	-				-1.6
2,524,602	-				+1.0
2,524,608	+				-2.1
2,524,608	+				+2.1
2,524,608	+				+0.5
2,524,608	+				+0.1
2,524,609	-				-0.4
2,524,609	-				-0.8
2,524,813	+		Psyr_2171	0.22	+0.3
2,524,862	+		Psyr_2171	0.28	+0.2
2,524,863	-		Psyr_2171	0.28	-0.5
2,524,865	+		Psyr_2171	0.29	-1.0