Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2070 and Psyr_2071 are separated by 544 nucleotides Psyr_2071 and Psyr_2072 are separated by 395 nucleotides Psyr_2072 and Psyr_2073 are separated by 86 nucleotides
Psyr_2070: Psyr_2070 - ErfK/YbiS/YcfS/YnhG, at 2,415,657 to 2,416,622
_2070
Psyr_2071: Psyr_2071 - outer membrane lipoprotein OprI, at 2,417,167 to 2,417,418
_2071
Psyr_2072: Psyr_2072 - conserved hypothetical protein, at 2,417,814 to 2,418,167
_2072
Psyr_2073: Psyr_2073 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 2,418,254 to 2,419,342
_2073
Position (kb)
2417
2418 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2416.293 kb on + strand, within Psyr_2070 at 2416.293 kb on + strand, within Psyr_2070 at 2416.293 kb on + strand, within Psyr_2070 at 2416.294 kb on - strand, within Psyr_2070 at 2416.294 kb on - strand, within Psyr_2070 at 2416.294 kb on - strand, within Psyr_2070 at 2416.294 kb on - strand, within Psyr_2070 at 2416.294 kb on - strand, within Psyr_2070 at 2416.302 kb on - strand, within Psyr_2070 at 2416.365 kb on + strand, within Psyr_2070 at 2416.365 kb on + strand, within Psyr_2070 at 2416.366 kb on - strand, within Psyr_2070 at 2416.366 kb on - strand, within Psyr_2070 at 2416.366 kb on - strand, within Psyr_2070 at 2416.395 kb on + strand, within Psyr_2070 at 2416.525 kb on + strand, within Psyr_2070 at 2416.525 kb on + strand, within Psyr_2070 at 2416.526 kb on - strand at 2416.621 kb on - strand at 2416.788 kb on - strand at 2416.788 kb on - strand at 2416.788 kb on - strand at 2417.047 kb on + strand at 2417.083 kb on - strand at 2417.165 kb on + strand at 2417.165 kb on + strand at 2417.165 kb on + strand at 2417.165 kb on + strand at 2417.165 kb on + strand at 2417.166 kb on - strand at 2417.166 kb on - strand at 2417.168 kb on + strand at 2417.168 kb on + strand at 2417.168 kb on + strand at 2417.253 kb on + strand, within Psyr_2071 at 2417.350 kb on + strand, within Psyr_2071 at 2417.351 kb on - strand, within Psyr_2071 at 2417.451 kb on + strand at 2417.452 kb on - strand at 2417.486 kb on - strand at 2417.486 kb on - strand at 2417.489 kb on + strand at 2417.489 kb on + strand at 2417.489 kb on + strand at 2417.489 kb on + strand at 2417.489 kb on + strand at 2417.489 kb on + strand at 2417.489 kb on + strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.490 kb on - strand at 2417.492 kb on + strand at 2417.493 kb on - strand at 2417.505 kb on + strand at 2417.505 kb on + strand at 2417.505 kb on + strand at 2417.506 kb on - strand at 2417.506 kb on - strand at 2417.506 kb on - strand at 2417.508 kb on + strand at 2417.569 kb on + strand at 2417.702 kb on + strand at 2417.723 kb on + strand at 2417.740 kb on + strand at 2417.741 kb on - strand at 2417.741 kb on - strand at 2417.743 kb on + strand at 2417.743 kb on + strand at 2417.811 kb on + strand at 2417.811 kb on + strand at 2417.811 kb on + strand at 2417.811 kb on + strand at 2417.811 kb on + strand at 2417.811 kb on + strand at 2417.811 kb on + strand at 2417.812 kb on - strand at 2417.812 kb on - strand at 2417.812 kb on - strand at 2417.812 kb on - strand at 2417.956 kb on - strand at 2417.956 kb on - strand, within Psyr_2072 at 2417.956 kb on - strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.964 kb on + strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.965 kb on - strand, within Psyr_2072 at 2417.966 kb on + strand, within Psyr_2072 at 2417.966 kb on + strand, within Psyr_2072 at 2417.966 kb on + strand, within Psyr_2072 at 2417.967 kb on - strand, within Psyr_2072 at 2417.974 kb on + strand, within Psyr_2072 at 2417.975 kb on - strand, within Psyr_2072 at 2417.975 kb on - strand, within Psyr_2072 at 2418.111 kb on + strand, within Psyr_2072 at 2418.111 kb on + strand, within Psyr_2072 at 2418.111 kb on + strand, within Psyr_2072 at 2418.111 kb on + strand, within Psyr_2072 at 2418.111 kb on + strand, within Psyr_2072 at 2418.111 kb on + strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.112 kb on - strand, within Psyr_2072 at 2418.123 kb on + strand, within Psyr_2072 at 2418.123 kb on + strand, within Psyr_2072 at 2418.123 kb on + strand, within Psyr_2072 at 2418.123 kb on + strand, within Psyr_2072 at 2418.176 kb on - strand at 2418.176 kb on - strand at 2418.195 kb on - strand at 2418.255 kb on + strand at 2418.255 kb on + strand at 2418.255 kb on + strand at 2418.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 2,416,293 + Psyr_2070 0.66 +1.2 2,416,293 + Psyr_2070 0.66 +0.7 2,416,293 + Psyr_2070 0.66 -0.0 2,416,294 - Psyr_2070 0.66 +0.1 2,416,294 - Psyr_2070 0.66 -1.0 2,416,294 - Psyr_2070 0.66 +0.6 2,416,294 - Psyr_2070 0.66 +0.1 2,416,294 - Psyr_2070 0.66 -1.2 2,416,302 - Psyr_2070 0.67 -1.8 2,416,365 + Psyr_2070 0.73 +0.4 2,416,365 + Psyr_2070 0.73 -0.5 2,416,366 - Psyr_2070 0.73 +0.5 2,416,366 - Psyr_2070 0.73 -0.7 2,416,366 - Psyr_2070 0.73 +0.9 2,416,395 + Psyr_2070 0.76 +0.1 2,416,525 + Psyr_2070 0.90 +0.3 2,416,525 + Psyr_2070 0.90 +2.2 2,416,526 - -0.9 2,416,621 - -0.6 2,416,788 - -0.2 2,416,788 - +0.2 2,416,788 - +0.7 2,417,047 + +0.5 2,417,083 - -0.8 2,417,165 + -1.6 2,417,165 + -0.9 2,417,165 + -0.0 2,417,165 + +0.4 2,417,165 + +0.7 2,417,166 - +1.0 2,417,166 - -0.1 2,417,168 + +0.7 2,417,168 + -0.3 2,417,168 + -0.5 2,417,253 + Psyr_2071 0.34 -3.1 2,417,350 + Psyr_2071 0.73 -1.9 2,417,351 - Psyr_2071 0.73 +0.8 2,417,451 + -0.7 2,417,452 - +1.3 2,417,486 - +1.4 2,417,486 - -0.8 2,417,489 + -0.5 2,417,489 + -0.6 2,417,489 + +1.1 2,417,489 + -0.8 2,417,489 + -0.2 2,417,489 + -0.6 2,417,489 + -0.6 2,417,490 - +1.2 2,417,490 - -0.3 2,417,490 - +0.7 2,417,490 - +0.5 2,417,490 - -1.3 2,417,490 - +1.4 2,417,490 - -1.1 2,417,490 - -0.3 2,417,490 - +2.3 2,417,492 + -0.4 2,417,493 - +0.0 2,417,505 + -0.9 2,417,505 + -0.0 2,417,505 + -0.4 2,417,506 - -1.3 2,417,506 - -0.9 2,417,506 - -0.3 2,417,508 + +0.1 2,417,569 + -0.6 2,417,702 + -0.6 2,417,723 + +0.9 2,417,740 + +0.0 2,417,741 - +0.4 2,417,741 - +1.2 2,417,743 + +0.7 2,417,743 + +0.4 2,417,811 + +0.2 2,417,811 + -0.5 2,417,811 + +0.9 2,417,811 + -0.9 2,417,811 + +1.1 2,417,811 + +0.7 2,417,811 + +1.2 2,417,812 - -0.9 2,417,812 - -0.2 2,417,812 - +0.5 2,417,812 - -0.5 2,417,956 - +1.7 2,417,956 - Psyr_2072 0.40 +0.5 2,417,956 - Psyr_2072 0.40 +0.4 2,417,964 + Psyr_2072 0.42 +0.2 2,417,964 + Psyr_2072 0.42 +0.7 2,417,964 + Psyr_2072 0.42 -0.8 2,417,964 + Psyr_2072 0.42 +0.3 2,417,964 + Psyr_2072 0.42 +0.8 2,417,964 + Psyr_2072 0.42 -0.2 2,417,964 + Psyr_2072 0.42 +0.3 2,417,964 + Psyr_2072 0.42 +1.1 2,417,965 - Psyr_2072 0.43 -0.3 2,417,965 - Psyr_2072 0.43 +1.0 2,417,965 - Psyr_2072 0.43 +0.5 2,417,965 - Psyr_2072 0.43 +0.4 2,417,965 - Psyr_2072 0.43 -0.3 2,417,965 - Psyr_2072 0.43 +0.1 2,417,965 - Psyr_2072 0.43 +0.7 2,417,965 - Psyr_2072 0.43 +0.6 2,417,965 - Psyr_2072 0.43 +1.5 2,417,966 + Psyr_2072 0.43 +1.1 2,417,966 + Psyr_2072 0.43 +1.2 2,417,966 + Psyr_2072 0.43 +0.1 2,417,967 - Psyr_2072 0.43 -1.3 2,417,974 + Psyr_2072 0.45 +0.3 2,417,975 - Psyr_2072 0.45 +0.7 2,417,975 - Psyr_2072 0.45 -1.1 2,418,111 + Psyr_2072 0.84 -0.6 2,418,111 + Psyr_2072 0.84 -0.9 2,418,111 + Psyr_2072 0.84 +0.5 2,418,111 + Psyr_2072 0.84 +1.1 2,418,111 + Psyr_2072 0.84 -0.3 2,418,111 + Psyr_2072 0.84 +0.3 2,418,112 - Psyr_2072 0.84 -0.1 2,418,112 - Psyr_2072 0.84 +0.7 2,418,112 - Psyr_2072 0.84 +0.7 2,418,112 - Psyr_2072 0.84 +1.4 2,418,112 - Psyr_2072 0.84 -1.1 2,418,112 - Psyr_2072 0.84 -0.2 2,418,112 - Psyr_2072 0.84 -0.6 2,418,123 + Psyr_2072 0.87 -0.5 2,418,123 + Psyr_2072 0.87 +0.8 2,418,123 + Psyr_2072 0.87 +1.1 2,418,123 + Psyr_2072 0.87 +0.7 2,418,176 - -1.1 2,418,176 - -0.4 2,418,195 - +0.7 2,418,255 + +0.8 2,418,255 + +0.1 2,418,255 + -0.4 2,418,256 - +0.7
Or see this region's nucleotide sequence