Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2071

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2070 and Psyr_2071 are separated by 544 nucleotidesPsyr_2071 and Psyr_2072 are separated by 395 nucleotidesPsyr_2072 and Psyr_2073 are separated by 86 nucleotides Psyr_2070: Psyr_2070 - ErfK/YbiS/YcfS/YnhG, at 2,415,657 to 2,416,622 _2070 Psyr_2071: Psyr_2071 - outer membrane lipoprotein OprI, at 2,417,167 to 2,417,418 _2071 Psyr_2072: Psyr_2072 - conserved hypothetical protein, at 2,417,814 to 2,418,167 _2072 Psyr_2073: Psyr_2073 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 2,418,254 to 2,419,342 _2073 Position (kb) 2417 2418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2416.293 kb on + strand, within Psyr_2070at 2416.293 kb on + strand, within Psyr_2070at 2416.293 kb on + strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.294 kb on - strand, within Psyr_2070at 2416.302 kb on - strand, within Psyr_2070at 2416.365 kb on + strand, within Psyr_2070at 2416.365 kb on + strand, within Psyr_2070at 2416.366 kb on - strand, within Psyr_2070at 2416.366 kb on - strand, within Psyr_2070at 2416.366 kb on - strand, within Psyr_2070at 2416.395 kb on + strand, within Psyr_2070at 2416.525 kb on + strand, within Psyr_2070at 2416.525 kb on + strand, within Psyr_2070at 2416.526 kb on - strandat 2416.621 kb on - strandat 2416.788 kb on - strandat 2416.788 kb on - strandat 2416.788 kb on - strandat 2417.047 kb on + strandat 2417.083 kb on - strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.165 kb on + strandat 2417.166 kb on - strandat 2417.166 kb on - strandat 2417.168 kb on + strandat 2417.168 kb on + strandat 2417.168 kb on + strandat 2417.253 kb on + strand, within Psyr_2071at 2417.350 kb on + strand, within Psyr_2071at 2417.351 kb on - strand, within Psyr_2071at 2417.451 kb on + strandat 2417.452 kb on - strandat 2417.486 kb on - strandat 2417.486 kb on - strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.489 kb on + strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.490 kb on - strandat 2417.492 kb on + strandat 2417.493 kb on - strandat 2417.505 kb on + strandat 2417.505 kb on + strandat 2417.505 kb on + strandat 2417.506 kb on - strandat 2417.506 kb on - strandat 2417.506 kb on - strandat 2417.508 kb on + strandat 2417.569 kb on + strandat 2417.702 kb on + strandat 2417.723 kb on + strandat 2417.740 kb on + strandat 2417.741 kb on - strandat 2417.741 kb on - strandat 2417.743 kb on + strandat 2417.743 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.811 kb on + strandat 2417.812 kb on - strandat 2417.812 kb on - strandat 2417.812 kb on - strandat 2417.812 kb on - strandat 2417.956 kb on - strandat 2417.956 kb on - strand, within Psyr_2072at 2417.956 kb on - strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.964 kb on + strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.965 kb on - strand, within Psyr_2072at 2417.966 kb on + strand, within Psyr_2072at 2417.966 kb on + strand, within Psyr_2072at 2417.966 kb on + strand, within Psyr_2072at 2417.967 kb on - strand, within Psyr_2072at 2417.974 kb on + strand, within Psyr_2072at 2417.975 kb on - strand, within Psyr_2072at 2417.975 kb on - strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.111 kb on + strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.112 kb on - strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.123 kb on + strand, within Psyr_2072at 2418.176 kb on - strandat 2418.176 kb on - strandat 2418.195 kb on - strandat 2418.255 kb on + strandat 2418.255 kb on + strandat 2418.255 kb on + strandat 2418.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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2,416,293 + Psyr_2070 0.66 +1.2
2,416,293 + Psyr_2070 0.66 +0.7
2,416,293 + Psyr_2070 0.66 -0.0
2,416,294 - Psyr_2070 0.66 +0.1
2,416,294 - Psyr_2070 0.66 -1.0
2,416,294 - Psyr_2070 0.66 +0.6
2,416,294 - Psyr_2070 0.66 +0.1
2,416,294 - Psyr_2070 0.66 -1.2
2,416,302 - Psyr_2070 0.67 -1.8
2,416,365 + Psyr_2070 0.73 +0.4
2,416,365 + Psyr_2070 0.73 -0.5
2,416,366 - Psyr_2070 0.73 +0.5
2,416,366 - Psyr_2070 0.73 -0.7
2,416,366 - Psyr_2070 0.73 +0.9
2,416,395 + Psyr_2070 0.76 +0.1
2,416,525 + Psyr_2070 0.90 +0.3
2,416,525 + Psyr_2070 0.90 +2.2
2,416,526 - -0.9
2,416,621 - -0.6
2,416,788 - -0.2
2,416,788 - +0.2
2,416,788 - +0.7
2,417,047 + +0.5
2,417,083 - -0.8
2,417,165 + -1.6
2,417,165 + -0.9
2,417,165 + -0.0
2,417,165 + +0.4
2,417,165 + +0.7
2,417,166 - +1.0
2,417,166 - -0.1
2,417,168 + +0.7
2,417,168 + -0.3
2,417,168 + -0.5
2,417,253 + Psyr_2071 0.34 -3.1
2,417,350 + Psyr_2071 0.73 -1.9
2,417,351 - Psyr_2071 0.73 +0.8
2,417,451 + -0.7
2,417,452 - +1.3
2,417,486 - +1.4
2,417,486 - -0.8
2,417,489 + -0.5
2,417,489 + -0.6
2,417,489 + +1.1
2,417,489 + -0.8
2,417,489 + -0.2
2,417,489 + -0.6
2,417,489 + -0.6
2,417,490 - +1.2
2,417,490 - -0.3
2,417,490 - +0.7
2,417,490 - +0.5
2,417,490 - -1.3
2,417,490 - +1.4
2,417,490 - -1.1
2,417,490 - -0.3
2,417,490 - +2.3
2,417,492 + -0.4
2,417,493 - +0.0
2,417,505 + -0.9
2,417,505 + -0.0
2,417,505 + -0.4
2,417,506 - -1.3
2,417,506 - -0.9
2,417,506 - -0.3
2,417,508 + +0.1
2,417,569 + -0.6
2,417,702 + -0.6
2,417,723 + +0.9
2,417,740 + +0.0
2,417,741 - +0.4
2,417,741 - +1.2
2,417,743 + +0.7
2,417,743 + +0.4
2,417,811 + +0.2
2,417,811 + -0.5
2,417,811 + +0.9
2,417,811 + -0.9
2,417,811 + +1.1
2,417,811 + +0.7
2,417,811 + +1.2
2,417,812 - -0.9
2,417,812 - -0.2
2,417,812 - +0.5
2,417,812 - -0.5
2,417,956 - +1.7
2,417,956 - Psyr_2072 0.40 +0.5
2,417,956 - Psyr_2072 0.40 +0.4
2,417,964 + Psyr_2072 0.42 +0.2
2,417,964 + Psyr_2072 0.42 +0.7
2,417,964 + Psyr_2072 0.42 -0.8
2,417,964 + Psyr_2072 0.42 +0.3
2,417,964 + Psyr_2072 0.42 +0.8
2,417,964 + Psyr_2072 0.42 -0.2
2,417,964 + Psyr_2072 0.42 +0.3
2,417,964 + Psyr_2072 0.42 +1.1
2,417,965 - Psyr_2072 0.43 -0.3
2,417,965 - Psyr_2072 0.43 +1.0
2,417,965 - Psyr_2072 0.43 +0.5
2,417,965 - Psyr_2072 0.43 +0.4
2,417,965 - Psyr_2072 0.43 -0.3
2,417,965 - Psyr_2072 0.43 +0.1
2,417,965 - Psyr_2072 0.43 +0.7
2,417,965 - Psyr_2072 0.43 +0.6
2,417,965 - Psyr_2072 0.43 +1.5
2,417,966 + Psyr_2072 0.43 +1.1
2,417,966 + Psyr_2072 0.43 +1.2
2,417,966 + Psyr_2072 0.43 +0.1
2,417,967 - Psyr_2072 0.43 -1.3
2,417,974 + Psyr_2072 0.45 +0.3
2,417,975 - Psyr_2072 0.45 +0.7
2,417,975 - Psyr_2072 0.45 -1.1
2,418,111 + Psyr_2072 0.84 -0.6
2,418,111 + Psyr_2072 0.84 -0.9
2,418,111 + Psyr_2072 0.84 +0.5
2,418,111 + Psyr_2072 0.84 +1.1
2,418,111 + Psyr_2072 0.84 -0.3
2,418,111 + Psyr_2072 0.84 +0.3
2,418,112 - Psyr_2072 0.84 -0.1
2,418,112 - Psyr_2072 0.84 +0.7
2,418,112 - Psyr_2072 0.84 +0.7
2,418,112 - Psyr_2072 0.84 +1.4
2,418,112 - Psyr_2072 0.84 -1.1
2,418,112 - Psyr_2072 0.84 -0.2
2,418,112 - Psyr_2072 0.84 -0.6
2,418,123 + Psyr_2072 0.87 -0.5
2,418,123 + Psyr_2072 0.87 +0.8
2,418,123 + Psyr_2072 0.87 +1.1
2,418,123 + Psyr_2072 0.87 +0.7
2,418,176 - -1.1
2,418,176 - -0.4
2,418,195 - +0.7
2,418,255 + +0.8
2,418,255 + +0.1
2,418,255 + -0.4
2,418,256 - +0.7

Or see this region's nucleotide sequence