Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1607 and Psyr_1608 are separated by 459 nucleotides Psyr_1608 and Psyr_1609 are separated by 251 nucleotides
Psyr_1607: Psyr_1607 - transcriptional regulator, GntR family, at 1,806,453 to 1,807,214
_1607
Psyr_1608: Psyr_1608 - ice-nucleation proteins octamer repeat protein, at 1,807,674 to 1,811,720
_1608
Psyr_1609: Psyr_1609 - Aspartyl aminopeptidase, at 1,811,972 to 1,813,261
_1609
Position (kb) 1807
1808
1809
1810
1811
1812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1806.726 kb on + strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.727 kb on - strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.915 kb on + strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.916 kb on - strand, within Psyr_1607 at 1806.928 kb on - strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.993 kb on + strand, within Psyr_1607 at 1806.994 kb on - strand, within Psyr_1607 at 1806.994 kb on - strand, within Psyr_1607 at 1807.125 kb on + strand, within Psyr_1607 at 1807.125 kb on + strand, within Psyr_1607 at 1807.181 kb on + strand at 1807.182 kb on - strand at 1807.223 kb on - strand at 1807.279 kb on + strand at 1807.284 kb on - strand at 1807.284 kb on - strand at 1807.419 kb on - strand at 1807.450 kb on - strand at 1807.453 kb on + strand at 1807.492 kb on - strand at 1807.521 kb on + strand at 1807.651 kb on - strand at 1807.651 kb on - strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.659 kb on + strand at 1807.660 kb on - strand at 1807.673 kb on - strand at 1807.715 kb on + strand at 1807.715 kb on + strand at 1807.716 kb on - strand at 1807.739 kb on + strand at 1807.739 kb on + strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.740 kb on - strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.741 kb on + strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.742 kb on - strand at 1807.774 kb on - strand at 1807.847 kb on - strand at 1808.077 kb on + strand at 1808.078 kb on - strand at 1808.078 kb on - strand at 1808.170 kb on + strand, within Psyr_1608 at 1808.170 kb on + strand, within Psyr_1608 at 1808.170 kb on + strand, within Psyr_1608 at 1808.171 kb on - strand, within Psyr_1608 at 1808.174 kb on + strand, within Psyr_1608 at 1808.174 kb on + strand, within Psyr_1608 at 1808.218 kb on - strand, within Psyr_1608 at 1808.218 kb on - strand, within Psyr_1608 at 1808.321 kb on + strand, within Psyr_1608 at 1808.487 kb on - strand, within Psyr_1608 at 1808.631 kb on - strand, within Psyr_1608 at 1808.657 kb on + strand, within Psyr_1608 at 1808.658 kb on - strand, within Psyr_1608 at 1808.729 kb on + strand, within Psyr_1608 at 1808.801 kb on + strand, within Psyr_1608 at 1809.610 kb on - strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.883 kb on + strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.884 kb on - strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.887 kb on + strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.888 kb on - strand, within Psyr_1608 at 1809.906 kb on - strand, within Psyr_1608 at 1809.953 kb on + strand, within Psyr_1608 at 1810.001 kb on + strand, within Psyr_1608 at 1810.002 kb on - strand, within Psyr_1608 at 1810.025 kb on + strand, within Psyr_1608 at 1810.098 kb on - strand, within Psyr_1608 at 1810.161 kb on + strand, within Psyr_1608 at 1810.234 kb on - strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.529 kb on + strand, within Psyr_1608 at 1810.530 kb on - strand, within Psyr_1608 at 1810.530 kb on - strand, within Psyr_1608 at 1810.545 kb on + strand, within Psyr_1608 at 1810.546 kb on - strand, within Psyr_1608 at 1810.546 kb on - strand, within Psyr_1608 at 1810.673 kb on + strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.674 kb on - strand, within Psyr_1608 at 1810.737 kb on + strand, within Psyr_1608 at 1810.738 kb on - strand, within Psyr_1608 at 1810.890 kb on - strand, within Psyr_1608 at 1810.890 kb on - strand, within Psyr_1608 at 1810.914 kb on - strand, within Psyr_1608 at 1810.914 kb on - strand, within Psyr_1608 at 1810.953 kb on + strand, within Psyr_1608 at 1811.058 kb on - strand, within Psyr_1608 at 1811.058 kb on - strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.111 kb on + strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.112 kb on - strand, within Psyr_1608 at 1811.219 kb on + strand, within Psyr_1608 at 1811.220 kb on - strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.300 kb on - strand, within Psyr_1608 at 1811.345 kb on + strand at 1811.345 kb on + strand at 1811.346 kb on - strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.394 kb on + strand at 1811.412 kb on - strand at 1811.489 kb on + strand at 1811.489 kb on + strand at 1811.490 kb on - strand at 1811.490 kb on - strand at 1811.520 kb on - strand at 1811.595 kb on + strand at 1811.595 kb on + strand at 1811.596 kb on - strand at 1811.644 kb on + strand at 1811.644 kb on + strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.645 kb on - strand at 1811.649 kb on + strand at 1811.652 kb on + strand at 1811.652 kb on + strand at 1811.673 kb on - strand at 1811.713 kb on + strand at 1811.713 kb on + strand at 1811.713 kb on + strand at 1811.714 kb on - strand at 1811.714 kb on - strand at 1811.796 kb on + strand at 1811.796 kb on + strand at 1811.796 kb on + strand at 1811.798 kb on + strand at 1811.799 kb on - strand at 1811.822 kb on - strand at 1811.822 kb on - strand at 1811.827 kb on - strand at 1811.827 kb on - strand at 1811.827 kb on - strand at 1811.827 kb on - strand at 1811.862 kb on + strand at 1811.875 kb on - strand at 1811.994 kb on + strand at 1811.994 kb on + strand at 1811.994 kb on + strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1811.995 kb on - strand at 1812.009 kb on - strand at 1812.089 kb on + strand at 1812.089 kb on + strand at 1812.090 kb on - strand at 1812.315 kb on + strand, within Psyr_1609 at 1812.315 kb on + strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.316 kb on - strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.381 kb on + strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.382 kb on - strand, within Psyr_1609 at 1812.618 kb on + strand, within Psyr_1609 at 1812.619 kb on - strand, within Psyr_1609 at 1812.619 kb on - strand, within Psyr_1609 at 1812.633 kb on + strand, within Psyr_1609
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 1,806,726 + Psyr_1607 0.36 -1.0 1,806,727 - Psyr_1607 0.36 +1.8 1,806,727 - Psyr_1607 0.36 +0.4 1,806,727 - Psyr_1607 0.36 -0.3 1,806,915 + Psyr_1607 0.61 -1.5 1,806,915 + Psyr_1607 0.61 -0.8 1,806,915 + Psyr_1607 0.61 -0.1 1,806,915 + Psyr_1607 0.61 +1.5 1,806,915 + Psyr_1607 0.61 -2.0 1,806,915 + Psyr_1607 0.61 -1.4 1,806,915 + Psyr_1607 0.61 +0.8 1,806,915 + Psyr_1607 0.61 -1.0 1,806,916 - Psyr_1607 0.61 -0.5 1,806,916 - Psyr_1607 0.61 +0.2 1,806,916 - Psyr_1607 0.61 -0.2 1,806,916 - Psyr_1607 0.61 +0.7 1,806,916 - Psyr_1607 0.61 +1.1 1,806,916 - Psyr_1607 0.61 +1.7 1,806,916 - Psyr_1607 0.61 +0.0 1,806,928 - Psyr_1607 0.62 -0.1 1,806,993 + Psyr_1607 0.71 -0.0 1,806,993 + Psyr_1607 0.71 +1.5 1,806,993 + Psyr_1607 0.71 -0.3 1,806,994 - Psyr_1607 0.71 -2.0 1,806,994 - Psyr_1607 0.71 -0.2 1,807,125 + Psyr_1607 0.88 -0.3 1,807,125 + Psyr_1607 0.88 -2.1 1,807,181 + -0.4 1,807,182 - -2.2 1,807,223 - -1.0 1,807,279 + +0.3 1,807,284 - -0.3 1,807,284 - -0.6 1,807,419 - -0.6 1,807,450 - -1.4 1,807,453 + +0.4 1,807,492 - +0.8 1,807,521 + +0.1 1,807,651 - -0.5 1,807,651 - -2.4 1,807,659 + -0.4 1,807,659 + -0.6 1,807,659 + -0.6 1,807,659 + -0.5 1,807,660 - +0.1 1,807,673 - -1.5 1,807,715 + +0.7 1,807,715 + +0.6 1,807,716 - -1.5 1,807,739 + +1.1 1,807,739 + -0.2 1,807,740 - +0.2 1,807,740 - -1.1 1,807,740 - -1.1 1,807,740 - -0.2 1,807,740 - -0.6 1,807,741 + +1.1 1,807,741 + -0.4 1,807,741 + -1.5 1,807,741 + +0.2 1,807,742 - +0.9 1,807,742 - -1.8 1,807,742 - -1.2 1,807,742 - +1.3 1,807,774 - -1.2 1,807,847 - +0.8 1,808,077 + -2.3 1,808,078 - +0.2 1,808,078 - -0.4 1,808,170 + Psyr_1608 0.12 +0.9 1,808,170 + Psyr_1608 0.12 +1.3 1,808,170 + Psyr_1608 0.12 -0.1 1,808,171 - Psyr_1608 0.12 -0.8 1,808,174 + Psyr_1608 0.12 +0.6 1,808,174 + Psyr_1608 0.12 -0.4 1,808,218 - Psyr_1608 0.13 +0.8 1,808,218 - Psyr_1608 0.13 +0.2 1,808,321 + Psyr_1608 0.16 +0.8 1,808,487 - Psyr_1608 0.20 +0.8 1,808,631 - Psyr_1608 0.24 +0.8 1,808,657 + Psyr_1608 0.24 -1.1 1,808,658 - Psyr_1608 0.24 +0.6 1,808,729 + Psyr_1608 0.26 +0.8 1,808,801 + Psyr_1608 0.28 +1.1 1,809,610 - Psyr_1608 0.48 +0.8 1,809,883 + Psyr_1608 0.55 +0.9 1,809,883 + Psyr_1608 0.55 -1.0 1,809,883 + Psyr_1608 0.55 -1.5 1,809,883 + Psyr_1608 0.55 -0.4 1,809,883 + Psyr_1608 0.55 -0.1 1,809,884 - Psyr_1608 0.55 +0.0 1,809,884 - Psyr_1608 0.55 +1.5 1,809,887 + Psyr_1608 0.55 +0.2 1,809,887 + Psyr_1608 0.55 +1.8 1,809,887 + Psyr_1608 0.55 +1.2 1,809,887 + Psyr_1608 0.55 +0.1 1,809,887 + Psyr_1608 0.55 +1.1 1,809,888 - Psyr_1608 0.55 -0.7 1,809,888 - Psyr_1608 0.55 -0.8 1,809,888 - Psyr_1608 0.55 +1.0 1,809,888 - Psyr_1608 0.55 -0.2 1,809,888 - Psyr_1608 0.55 +0.0 1,809,888 - Psyr_1608 0.55 -0.4 1,809,888 - Psyr_1608 0.55 -0.9 1,809,888 - Psyr_1608 0.55 +0.8 1,809,888 - Psyr_1608 0.55 -2.0 1,809,888 - Psyr_1608 0.55 +0.8 1,809,888 - Psyr_1608 0.55 -0.4 1,809,906 - Psyr_1608 0.55 +0.8 1,809,953 + Psyr_1608 0.56 +1.3 1,810,001 + Psyr_1608 0.57 -1.5 1,810,002 - Psyr_1608 0.58 -0.8 1,810,025 + Psyr_1608 0.58 -0.7 1,810,098 - Psyr_1608 0.60 +0.1 1,810,161 + Psyr_1608 0.61 +1.6 1,810,234 - Psyr_1608 0.63 +0.5 1,810,529 + Psyr_1608 0.71 -1.2 1,810,529 + Psyr_1608 0.71 +0.1 1,810,529 + Psyr_1608 0.71 +0.6 1,810,530 - Psyr_1608 0.71 -0.4 1,810,530 - Psyr_1608 0.71 +0.6 1,810,545 + Psyr_1608 0.71 +0.8 1,810,546 - Psyr_1608 0.71 -0.6 1,810,546 - Psyr_1608 0.71 -0.3 1,810,673 + Psyr_1608 0.74 +1.5 1,810,674 - Psyr_1608 0.74 +0.6 1,810,674 - Psyr_1608 0.74 +0.2 1,810,674 - Psyr_1608 0.74 +1.6 1,810,737 + Psyr_1608 0.76 -1.0 1,810,738 - Psyr_1608 0.76 +2.4 1,810,890 - Psyr_1608 0.79 -0.2 1,810,890 - Psyr_1608 0.79 -1.5 1,810,914 - Psyr_1608 0.80 +0.0 1,810,914 - Psyr_1608 0.80 +0.5 1,810,953 + Psyr_1608 0.81 +0.7 1,811,058 - Psyr_1608 0.84 +0.8 1,811,058 - Psyr_1608 0.84 +0.7 1,811,111 + Psyr_1608 0.85 +0.5 1,811,111 + Psyr_1608 0.85 +0.8 1,811,111 + Psyr_1608 0.85 -0.3 1,811,111 + Psyr_1608 0.85 +0.3 1,811,111 + Psyr_1608 0.85 -0.9 1,811,112 - Psyr_1608 0.85 +0.7 1,811,112 - Psyr_1608 0.85 -1.5 1,811,112 - Psyr_1608 0.85 +0.5 1,811,112 - Psyr_1608 0.85 +0.6 1,811,112 - Psyr_1608 0.85 +0.8 1,811,112 - Psyr_1608 0.85 +1.1 1,811,219 + Psyr_1608 0.88 +0.6 1,811,220 - Psyr_1608 0.88 +2.4 1,811,300 - Psyr_1608 0.90 -0.2 1,811,300 - Psyr_1608 0.90 +1.3 1,811,345 + +0.3 1,811,345 + +1.1 1,811,346 - +0.3 1,811,394 + +0.5 1,811,394 + +0.0 1,811,394 + +0.5 1,811,412 - +0.7 1,811,489 + +0.2 1,811,489 + -0.2 1,811,490 - +0.8 1,811,490 - -0.2 1,811,520 - +0.4 1,811,595 + +0.1 1,811,595 + +0.1 1,811,596 - -1.1 1,811,644 + -0.7 1,811,644 + +0.2 1,811,645 - -0.3 1,811,645 - +2.4 1,811,645 - +0.1 1,811,649 + -0.8 1,811,652 + -0.6 1,811,652 + +1.9 1,811,673 - -0.9 1,811,713 + -0.7 1,811,713 + -0.2 1,811,713 + -1.8 1,811,714 - -2.9 1,811,714 - -0.9 1,811,796 + +0.2 1,811,796 + -1.5 1,811,796 + -0.4 1,811,798 + -0.3 1,811,799 - -1.5 1,811,822 - -1.2 1,811,822 - +1.4 1,811,827 - -1.7 1,811,827 - -0.2 1,811,827 - -1.0 1,811,827 - +0.5 1,811,862 + -0.8 1,811,875 - -1.6 1,811,994 + +1.1 1,811,994 + +0.2 1,811,994 + +4.4 1,811,995 - +0.3 1,811,995 - -0.3 1,811,995 - +1.8 1,811,995 - +0.7 1,812,009 - -0.2 1,812,089 + +0.3 1,812,089 + -1.0 1,812,090 - -1.7 1,812,315 + Psyr_1609 0.27 -1.0 1,812,315 + Psyr_1609 0.27 -1.5 1,812,316 - Psyr_1609 0.27 -0.5 1,812,316 - Psyr_1609 0.27 -0.3 1,812,316 - Psyr_1609 0.27 +2.8 1,812,381 + Psyr_1609 0.32 -1.6 1,812,381 + Psyr_1609 0.32 +0.6 1,812,382 - Psyr_1609 0.32 -0.2 1,812,382 - Psyr_1609 0.32 -0.4 1,812,618 + Psyr_1609 0.50 -0.2 1,812,619 - Psyr_1609 0.50 +0.6 1,812,619 - Psyr_1609 0.50 +1.7 1,812,633 + Psyr_1609 0.51 +0.9
Or see this region's nucleotide sequence