Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1498

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1496 and Psyr_1497 are separated by 55 nucleotidesPsyr_1497 and Psyr_1498 overlap by 4 nucleotidesPsyr_1498 and Psyr_1499 are separated by 69 nucleotidesPsyr_1499 and Psyr_1500 are separated by 35 nucleotides Psyr_1496: Psyr_1496 - Copper resistance D, at 1,684,731 to 1,685,663 _1496 Psyr_1497: Psyr_1497 - Heavy metal response regulator, at 1,685,719 to 1,686,405 _1497 Psyr_1498: Psyr_1498 - Heavy metal sensor kinase, at 1,686,402 to 1,687,781 _1498 Psyr_1499: Psyr_1499 - Protein of unknown function DUF, at 1,687,851 to 1,688,312 _1499 Psyr_1500: Psyr_1500 - GCN5-related N-acetyltransferase, at 1,688,348 to 1,688,902 _1500 Position (kb) 1686 1687 1688Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1685.542 kb on - strand, within Psyr_1496at 1685.568 kb on + strand, within Psyr_1496at 1685.568 kb on + strand, within Psyr_1496at 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.570 kb on + strandat 1685.571 kb on - strandat 1685.571 kb on - strandat 1685.571 kb on - strandat 1685.748 kb on + strandat 1685.749 kb on - strandat 1685.761 kb on + strandat 1685.761 kb on + strandat 1685.762 kb on - strandat 1685.851 kb on + strand, within Psyr_1497at 1685.851 kb on + strand, within Psyr_1497at 1685.852 kb on - strand, within Psyr_1497at 1686.010 kb on + strand, within Psyr_1497at 1686.010 kb on + strand, within Psyr_1497at 1686.063 kb on - strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.099 kb on + strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.100 kb on - strand, within Psyr_1497at 1686.245 kb on + strand, within Psyr_1497at 1686.246 kb on - strand, within Psyr_1497at 1686.357 kb on + strandat 1686.357 kb on + strandat 1686.357 kb on + strandat 1686.358 kb on - strandat 1686.358 kb on - strandat 1686.358 kb on - strandat 1686.376 kb on + strandat 1686.377 kb on - strandat 1686.377 kb on - strandat 1686.377 kb on - strandat 1686.377 kb on - strandat 1686.383 kb on + strandat 1686.383 kb on + strandat 1686.430 kb on + strandat 1686.430 kb on + strandat 1686.649 kb on + strand, within Psyr_1498at 1686.650 kb on - strand, within Psyr_1498at 1686.851 kb on + strand, within Psyr_1498at 1686.851 kb on + strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.852 kb on - strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.895 kb on + strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.896 kb on - strand, within Psyr_1498at 1686.902 kb on + strand, within Psyr_1498at 1686.903 kb on - strand, within Psyr_1498at 1686.913 kb on + strand, within Psyr_1498at 1687.212 kb on + strand, within Psyr_1498at 1687.213 kb on - strand, within Psyr_1498at 1687.213 kb on - strand, within Psyr_1498at 1687.306 kb on + strand, within Psyr_1498at 1687.365 kb on + strand, within Psyr_1498at 1687.366 kb on - strand, within Psyr_1498at 1687.368 kb on + strand, within Psyr_1498at 1687.369 kb on - strand, within Psyr_1498at 1687.369 kb on - strand, within Psyr_1498at 1687.369 kb on - strand, within Psyr_1498at 1687.402 kb on + strand, within Psyr_1498at 1687.402 kb on + strand, within Psyr_1498at 1687.403 kb on - strand, within Psyr_1498at 1687.403 kb on - strand, within Psyr_1498at 1687.403 kb on - strand, within Psyr_1498at 1687.453 kb on + strand, within Psyr_1498at 1687.454 kb on + strand, within Psyr_1498at 1687.455 kb on - strand, within Psyr_1498at 1687.490 kb on + strand, within Psyr_1498at 1687.490 kb on + strand, within Psyr_1498at 1687.490 kb on + strand, within Psyr_1498at 1687.544 kb on - strand, within Psyr_1498at 1687.576 kb on + strand, within Psyr_1498at 1687.576 kb on + strand, within Psyr_1498at 1687.704 kb on - strandat 1687.706 kb on + strandat 1687.706 kb on + strandat 1687.707 kb on - strandat 1687.707 kb on - strandat 1687.707 kb on - strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.715 kb on + strandat 1687.716 kb on - strandat 1687.716 kb on - strandat 1688.055 kb on + strand, within Psyr_1499at 1688.055 kb on + strand, within Psyr_1499at 1688.056 kb on - strand, within Psyr_1499at 1688.056 kb on - strand, within Psyr_1499at 1688.056 kb on - strand, within Psyr_1499at 1688.164 kb on + strand, within Psyr_1499at 1688.164 kb on + strand, within Psyr_1499at 1688.294 kb on + strandat 1688.295 kb on - strandat 1688.295 kb on - strandat 1688.295 kb on - strandat 1688.301 kb on + strandat 1688.301 kb on + strandat 1688.301 kb on + strandat 1688.301 kb on + strandat 1688.301 kb on + strandat 1688.302 kb on - strandat 1688.302 kb on - strandat 1688.302 kb on - strandat 1688.304 kb on - strandat 1688.326 kb on - strandat 1688.327 kb on + strandat 1688.327 kb on + strandat 1688.349 kb on + strandat 1688.349 kb on + strandat 1688.349 kb on + strandat 1688.350 kb on - strandat 1688.350 kb on - strandat 1688.350 kb on - strandat 1688.469 kb on + strand, within Psyr_1500at 1688.469 kb on + strand, within Psyr_1500at 1688.469 kb on + strand, within Psyr_1500at 1688.469 kb on + strand, within Psyr_1500at 1688.469 kb on + strand, within Psyr_1500at 1688.469 kb on + strand, within Psyr_1500at 1688.469 kb on + strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.470 kb on - strand, within Psyr_1500at 1688.492 kb on + strand, within Psyr_1500at 1688.505 kb on - strand, within Psyr_1500at 1688.505 kb on - strand, within Psyr_1500at 1688.505 kb on - strand, within Psyr_1500at 1688.510 kb on + strand, within Psyr_1500at 1688.593 kb on - strand, within Psyr_1500at 1688.593 kb on - strand, within Psyr_1500at 1688.637 kb on + strand, within Psyr_1500at 1688.637 kb on + strand, within Psyr_1500at 1688.637 kb on + strand, within Psyr_1500at 1688.637 kb on + strand, within Psyr_1500at 1688.637 kb on + strand, within Psyr_1500at 1688.637 kb on + strandat 1688.637 kb on + strand, within Psyr_1500at 1688.637 kb on + strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.638 kb on - strand, within Psyr_1500at 1688.664 kb on + strand, within Psyr_1500at 1688.664 kb on + strand, within Psyr_1500at 1688.700 kb on + strand, within Psyr_1500at 1688.700 kb on + strand, within Psyr_1500at 1688.742 kb on + strand, within Psyr_1500

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,685,542 - Psyr_1496 0.87 +0.1
1,685,568 + Psyr_1496 0.90 +0.0
1,685,568 + Psyr_1496 0.90 -0.1
1,685,570 + -1.7
1,685,570 + +0.5
1,685,570 + -0.4
1,685,570 + -0.4
1,685,570 + -0.3
1,685,570 + -1.5
1,685,571 - -0.5
1,685,571 - +0.7
1,685,571 - -0.7
1,685,748 + +0.3
1,685,749 - +0.3
1,685,761 + +1.6
1,685,761 + -0.3
1,685,762 - -0.1
1,685,851 + Psyr_1497 0.19 -1.5
1,685,851 + Psyr_1497 0.19 +0.1
1,685,852 - Psyr_1497 0.19 +0.4
1,686,010 + Psyr_1497 0.42 -0.1
1,686,010 + Psyr_1497 0.42 -0.1
1,686,063 - Psyr_1497 0.50 -0.2
1,686,099 + Psyr_1497 0.55 -0.9
1,686,099 + Psyr_1497 0.55 +1.1
1,686,099 + Psyr_1497 0.55 +1.1
1,686,099 + Psyr_1497 0.55 -0.5
1,686,100 - Psyr_1497 0.55 +0.1
1,686,100 - Psyr_1497 0.55 +0.3
1,686,100 - Psyr_1497 0.55 -1.0
1,686,100 - Psyr_1497 0.55 +0.1
1,686,245 + Psyr_1497 0.77 -2.1
1,686,246 - Psyr_1497 0.77 +0.3
1,686,357 + +0.2
1,686,357 + +0.5
1,686,357 + +0.1
1,686,358 - +0.2
1,686,358 - -0.7
1,686,358 - +0.3
1,686,376 + +0.5
1,686,377 - +1.4
1,686,377 - +0.3
1,686,377 - +0.7
1,686,377 - -1.1
1,686,383 + +1.2
1,686,383 + +0.2
1,686,430 + -0.2
1,686,430 + -0.2
1,686,649 + Psyr_1498 0.18 -1.0
1,686,650 - Psyr_1498 0.18 -0.1
1,686,851 + Psyr_1498 0.33 -0.4
1,686,851 + Psyr_1498 0.33 +0.5
1,686,852 - Psyr_1498 0.33 +0.9
1,686,852 - Psyr_1498 0.33 +0.3
1,686,852 - Psyr_1498 0.33 +0.9
1,686,852 - Psyr_1498 0.33 +0.5
1,686,852 - Psyr_1498 0.33 -0.5
1,686,895 + Psyr_1498 0.36 -0.8
1,686,895 + Psyr_1498 0.36 +1.9
1,686,895 + Psyr_1498 0.36 +0.9
1,686,895 + Psyr_1498 0.36 -0.3
1,686,895 + Psyr_1498 0.36 +1.3
1,686,895 + Psyr_1498 0.36 -0.3
1,686,896 - Psyr_1498 0.36 +0.6
1,686,896 - Psyr_1498 0.36 +0.9
1,686,896 - Psyr_1498 0.36 +0.6
1,686,896 - Psyr_1498 0.36 +0.5
1,686,902 + Psyr_1498 0.36 +0.9
1,686,903 - Psyr_1498 0.36 +0.5
1,686,913 + Psyr_1498 0.37 -0.5
1,687,212 + Psyr_1498 0.59 +2.7
1,687,213 - Psyr_1498 0.59 +0.1
1,687,213 - Psyr_1498 0.59 +1.6
1,687,306 + Psyr_1498 0.66 -0.4
1,687,365 + Psyr_1498 0.70 +0.5
1,687,366 - Psyr_1498 0.70 -1.0
1,687,368 + Psyr_1498 0.70 +0.2
1,687,369 - Psyr_1498 0.70 +0.9
1,687,369 - Psyr_1498 0.70 +1.0
1,687,369 - Psyr_1498 0.70 +0.7
1,687,402 + Psyr_1498 0.72 -0.1
1,687,402 + Psyr_1498 0.72 +0.6
1,687,403 - Psyr_1498 0.73 -0.7
1,687,403 - Psyr_1498 0.73 -1.1
1,687,403 - Psyr_1498 0.73 +0.9
1,687,453 + Psyr_1498 0.76 +1.2
1,687,454 + Psyr_1498 0.76 +0.2
1,687,455 - Psyr_1498 0.76 +0.9
1,687,490 + Psyr_1498 0.79 -0.7
1,687,490 + Psyr_1498 0.79 +1.0
1,687,490 + Psyr_1498 0.79 -0.7
1,687,544 - Psyr_1498 0.83 -0.6
1,687,576 + Psyr_1498 0.85 +1.0
1,687,576 + Psyr_1498 0.85 -0.1
1,687,704 - -0.0
1,687,706 + -0.4
1,687,706 + +0.3
1,687,707 - +0.3
1,687,707 - -0.5
1,687,707 - +1.7
1,687,715 + +0.3
1,687,715 + +0.3
1,687,715 + +0.7
1,687,715 + -0.3
1,687,715 + -0.6
1,687,715 + -2.3
1,687,715 + +0.3
1,687,715 + +0.1
1,687,715 + -0.8
1,687,715 + +1.2
1,687,716 - +0.1
1,687,716 - +0.3
1,688,055 + Psyr_1499 0.44 -0.7
1,688,055 + Psyr_1499 0.44 -0.5
1,688,056 - Psyr_1499 0.44 -0.5
1,688,056 - Psyr_1499 0.44 -0.1
1,688,056 - Psyr_1499 0.44 +0.3
1,688,164 + Psyr_1499 0.68 +0.6
1,688,164 + Psyr_1499 0.68 +1.3
1,688,294 + -0.0
1,688,295 - -0.5
1,688,295 - +0.9
1,688,295 - +2.2
1,688,301 + +0.1
1,688,301 + +0.2
1,688,301 + -0.1
1,688,301 + +0.0
1,688,301 + -0.7
1,688,302 - -0.4
1,688,302 - +0.2
1,688,302 - +0.4
1,688,304 - -1.1
1,688,326 - -0.1
1,688,327 + -1.3
1,688,327 + -1.1
1,688,349 + +0.6
1,688,349 + -0.5
1,688,349 + -1.1
1,688,350 - -0.7
1,688,350 - -0.2
1,688,350 - +1.1
1,688,469 + Psyr_1500 0.22 -0.1
1,688,469 + Psyr_1500 0.22 -0.1
1,688,469 + Psyr_1500 0.22 +1.1
1,688,469 + Psyr_1500 0.22 +0.0
1,688,469 + Psyr_1500 0.22 +0.0
1,688,469 + Psyr_1500 0.22 +0.9
1,688,469 + Psyr_1500 0.22 +0.3
1,688,470 - Psyr_1500 0.22 -0.4
1,688,470 - Psyr_1500 0.22 +1.6
1,688,470 - Psyr_1500 0.22 +0.5
1,688,470 - Psyr_1500 0.22 +3.7
1,688,470 - Psyr_1500 0.22 -0.4
1,688,470 - Psyr_1500 0.22 -2.5
1,688,470 - Psyr_1500 0.22 -0.2
1,688,470 - Psyr_1500 0.22 +0.0
1,688,492 + Psyr_1500 0.26 +0.1
1,688,505 - Psyr_1500 0.28 -2.3
1,688,505 - Psyr_1500 0.28 +1.0
1,688,505 - Psyr_1500 0.28 +0.9
1,688,510 + Psyr_1500 0.29 +1.7
1,688,593 - Psyr_1500 0.44 +0.3
1,688,593 - Psyr_1500 0.44 -1.1
1,688,637 + Psyr_1500 0.52 -1.1
1,688,637 + Psyr_1500 0.52 +1.9
1,688,637 + Psyr_1500 0.52 +0.3
1,688,637 + Psyr_1500 0.52 -1.3
1,688,637 + Psyr_1500 0.52 +0.7
1,688,637 + +0.9
1,688,637 + Psyr_1500 0.52 +1.6
1,688,637 + Psyr_1500 0.52 -0.4
1,688,638 - Psyr_1500 0.52 -0.9
1,688,638 - Psyr_1500 0.52 +0.4
1,688,638 - Psyr_1500 0.52 -0.9
1,688,638 - Psyr_1500 0.52 +0.3
1,688,638 - Psyr_1500 0.52 -1.0
1,688,638 - Psyr_1500 0.52 +2.3
1,688,638 - Psyr_1500 0.52 +0.9
1,688,638 - Psyr_1500 0.52 -1.2
1,688,638 - Psyr_1500 0.52 -0.4
1,688,638 - Psyr_1500 0.52 -0.1
1,688,664 + Psyr_1500 0.57 +0.6
1,688,664 + Psyr_1500 0.57 -0.6
1,688,700 + Psyr_1500 0.63 +1.1
1,688,700 + Psyr_1500 0.63 +0.3
1,688,742 + Psyr_1500 0.71 +0.9

Or see this region's nucleotide sequence