Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1417

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1415 and Psyr_1416 are separated by 52 nucleotidesPsyr_1416 and Psyr_1417 are separated by 78 nucleotidesPsyr_1417 and Psyr_1418 are separated by 171 nucleotidesPsyr_1418 and Psyr_1419 are separated by 1 nucleotides Psyr_1415: Psyr_1415 - TolB, N-terminal:TolB, N-terminal, at 1,600,063 to 1,601,364 _1415 Psyr_1416: Psyr_1416 - OmpA/MotB, at 1,601,417 to 1,601,920 _1416 Psyr_1417: Psyr_1417 - TPR repeat protein, at 1,601,999 to 1,602,745 _1417 Psyr_1418: Psyr_1418 - Radical SAM, at 1,602,917 to 1,603,564 _1418 Psyr_1419: Psyr_1419 - preQ(0) biosynthesis protein QueC, at 1,603,566 to 1,604,255 _1419 Position (kb) 1601 1602 1603Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1601.353 kb on + strandat 1601.404 kb on + strandat 1601.404 kb on + strandat 1601.914 kb on + strandat 1601.918 kb on + strandat 1601.918 kb on + strandat 1602.241 kb on + strand, within Psyr_1417at 1602.241 kb on + strand, within Psyr_1417at 1602.241 kb on + strand, within Psyr_1417at 1602.241 kb on + strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.242 kb on - strand, within Psyr_1417at 1602.274 kb on + strand, within Psyr_1417at 1602.275 kb on - strand, within Psyr_1417at 1602.389 kb on + strand, within Psyr_1417at 1602.390 kb on - strand, within Psyr_1417at 1602.470 kb on + strand, within Psyr_1417at 1602.471 kb on - strand, within Psyr_1417at 1602.486 kb on - strand, within Psyr_1417at 1602.614 kb on + strand, within Psyr_1417at 1602.614 kb on + strand, within Psyr_1417at 1602.615 kb on - strand, within Psyr_1417at 1602.669 kb on + strand, within Psyr_1417at 1602.669 kb on + strand, within Psyr_1417at 1602.670 kb on - strand, within Psyr_1417at 1602.778 kb on - strandat 1602.828 kb on + strandat 1602.894 kb on + strandat 1602.894 kb on + strandat 1602.894 kb on + strandat 1602.894 kb on + strandat 1602.930 kb on + strandat 1602.930 kb on + strandat 1602.993 kb on + strand, within Psyr_1418at 1603.118 kb on + strand, within Psyr_1418at 1603.118 kb on + strand, within Psyr_1418at 1603.119 kb on - strand, within Psyr_1418at 1603.203 kb on + strand, within Psyr_1418at 1603.203 kb on + strand, within Psyr_1418at 1603.204 kb on - strand, within Psyr_1418at 1603.310 kb on + strand, within Psyr_1418at 1603.377 kb on - strand, within Psyr_1418at 1603.407 kb on - strand, within Psyr_1418at 1603.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,601,353 + -0.4
1,601,404 + +0.5
1,601,404 + -1.5
1,601,914 + +1.5
1,601,918 + +0.5
1,601,918 + -0.1
1,602,241 + Psyr_1417 0.32 +0.2
1,602,241 + Psyr_1417 0.32 -1.3
1,602,241 + Psyr_1417 0.32 +2.9
1,602,241 + Psyr_1417 0.32 -1.6
1,602,242 - Psyr_1417 0.33 -1.5
1,602,242 - Psyr_1417 0.33 -1.9
1,602,242 - Psyr_1417 0.33 -1.1
1,602,242 - Psyr_1417 0.33 -2.3
1,602,242 - Psyr_1417 0.33 -0.1
1,602,242 - Psyr_1417 0.33 -1.7
1,602,242 - Psyr_1417 0.33 -2.5
1,602,242 - Psyr_1417 0.33 -1.1
1,602,242 - Psyr_1417 0.33 -1.6
1,602,242 - Psyr_1417 0.33 -1.0
1,602,242 - Psyr_1417 0.33 -1.3
1,602,242 - Psyr_1417 0.33 -1.5
1,602,242 - Psyr_1417 0.33 -1.9
1,602,274 + Psyr_1417 0.37 -0.1
1,602,275 - Psyr_1417 0.37 -1.1
1,602,389 + Psyr_1417 0.52 +0.4
1,602,390 - Psyr_1417 0.52 -1.5
1,602,470 + Psyr_1417 0.63 -0.4
1,602,471 - Psyr_1417 0.63 -1.1
1,602,486 - Psyr_1417 0.65 -1.7
1,602,614 + Psyr_1417 0.82 -0.1
1,602,614 + Psyr_1417 0.82 +0.5
1,602,615 - Psyr_1417 0.82 -1.0
1,602,669 + Psyr_1417 0.90 +1.5
1,602,669 + Psyr_1417 0.90 -0.3
1,602,670 - Psyr_1417 0.90 -1.8
1,602,778 - -1.4
1,602,828 + +1.7
1,602,894 + +0.3
1,602,894 + +0.1
1,602,894 + +2.5
1,602,894 + +0.5
1,602,930 + -0.3
1,602,930 + -0.1
1,602,993 + Psyr_1418 0.12 -1.7
1,603,118 + Psyr_1418 0.31 +0.9
1,603,118 + Psyr_1418 0.31 -0.7
1,603,119 - Psyr_1418 0.31 -1.5
1,603,203 + Psyr_1418 0.44 -0.1
1,603,203 + Psyr_1418 0.44 -0.6
1,603,204 - Psyr_1418 0.44 -0.1
1,603,310 + Psyr_1418 0.61 -0.5
1,603,377 - Psyr_1418 0.71 -2.6
1,603,407 - Psyr_1418 0.76 +0.3
1,603,565 + -0.0

Or see this region's nucleotide sequence