Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1210

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1208 and Psyr_1209 overlap by 4 nucleotidesPsyr_1209 and Psyr_1210 overlap by 11 nucleotidesPsyr_1210 and Psyr_1211 overlap by 4 nucleotidesPsyr_1211 and Psyr_1212 are separated by 6 nucleotides Psyr_1208: Psyr_1208 - type III secretion protein HrcR, at 1,366,278 to 1,366,931 _1208 Psyr_1209: Psyr_1209 - type III secretion protein HrcQb, at 1,366,928 to 1,367,326 _1209 Psyr_1210: Psyr_1210 - type III secretion protein HrcQa, at 1,367,316 to 1,368,032 _1210 Psyr_1211: Psyr_1211 - type III secretion protein HrpP, at 1,368,029 to 1,368,601 _1211 Psyr_1212: Psyr_1212 - type III secretion protein HrpO, at 1,368,608 to 1,369,054 _1212 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.444 kb on + strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.445 kb on - strand, within Psyr_1208at 1366.565 kb on + strandat 1366.707 kb on + strand, within Psyr_1208at 1366.707 kb on + strand, within Psyr_1208at 1366.707 kb on + strand, within Psyr_1208at 1366.707 kb on + strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.708 kb on - strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.762 kb on + strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1366.763 kb on - strand, within Psyr_1208at 1367.277 kb on + strand, within Psyr_1209at 1367.278 kb on - strand, within Psyr_1209at 1367.307 kb on + strandat 1367.307 kb on + strandat 1367.308 kb on - strandat 1367.308 kb on - strandat 1367.320 kb on + strandat 1367.321 kb on - strandat 1367.656 kb on - strand, within Psyr_1210at 1367.656 kb on - strand, within Psyr_1210at 1367.656 kb on - strand, within Psyr_1210at 1367.757 kb on + strand, within Psyr_1210at 1367.757 kb on + strand, within Psyr_1210at 1367.802 kb on + strand, within Psyr_1210at 1367.802 kb on + strand, within Psyr_1210at 1367.803 kb on - strand, within Psyr_1210at 1367.803 kb on - strand, within Psyr_1210at 1367.864 kb on + strand, within Psyr_1210at 1367.864 kb on + strand, within Psyr_1210at 1367.865 kb on - strand, within Psyr_1210at 1368.362 kb on + strand, within Psyr_1211at 1368.362 kb on + strand, within Psyr_1211at 1368.363 kb on - strand, within Psyr_1211at 1368.363 kb on - strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.455 kb on + strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.456 kb on - strand, within Psyr_1211at 1368.609 kb on + strandat 1368.610 kb on - strandat 1368.716 kb on + strand, within Psyr_1212at 1368.862 kb on + strand, within Psyr_1212at 1368.863 kb on - strand, within Psyr_1212at 1368.905 kb on + strand, within Psyr_1212at 1368.906 kb on - strand, within Psyr_1212

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,366,444 + Psyr_1208 0.25 +1.1
1,366,444 + Psyr_1208 0.25 +0.2
1,366,444 + Psyr_1208 0.25 +0.3
1,366,444 + Psyr_1208 0.25 +1.1
1,366,444 + Psyr_1208 0.25 +1.4
1,366,444 + Psyr_1208 0.25 +0.1
1,366,444 + Psyr_1208 0.25 -0.2
1,366,444 + Psyr_1208 0.25 +0.8
1,366,444 + Psyr_1208 0.25 -1.0
1,366,444 + Psyr_1208 0.25 +0.6
1,366,444 + Psyr_1208 0.25 +0.3
1,366,444 + Psyr_1208 0.25 +0.3
1,366,444 + Psyr_1208 0.25 +1.0
1,366,444 + Psyr_1208 0.25 -1.1
1,366,444 + Psyr_1208 0.25 -1.2
1,366,444 + Psyr_1208 0.25 -0.5
1,366,444 + Psyr_1208 0.25 +1.2
1,366,444 + Psyr_1208 0.25 -0.2
1,366,444 + Psyr_1208 0.25 +1.1
1,366,444 + Psyr_1208 0.25 +3.2
1,366,444 + Psyr_1208 0.25 -0.2
1,366,444 + Psyr_1208 0.25 +0.6
1,366,444 + Psyr_1208 0.25 -1.5
1,366,444 + Psyr_1208 0.25 +0.0
1,366,444 + Psyr_1208 0.25 +1.2
1,366,444 + Psyr_1208 0.25 -0.2
1,366,444 + Psyr_1208 0.25 -0.4
1,366,444 + Psyr_1208 0.25 -1.3
1,366,444 + Psyr_1208 0.25 +0.7
1,366,444 + Psyr_1208 0.25 +0.8
1,366,445 - Psyr_1208 0.26 +1.3
1,366,445 - Psyr_1208 0.26 -0.4
1,366,445 - Psyr_1208 0.26 -0.4
1,366,445 - Psyr_1208 0.26 +0.5
1,366,445 - Psyr_1208 0.26 -0.2
1,366,445 - Psyr_1208 0.26 -1.5
1,366,445 - Psyr_1208 0.26 +0.7
1,366,445 - Psyr_1208 0.26 -0.1
1,366,445 - Psyr_1208 0.26 -0.1
1,366,445 - Psyr_1208 0.26 -0.3
1,366,445 - Psyr_1208 0.26 -1.2
1,366,445 - Psyr_1208 0.26 -0.2
1,366,445 - Psyr_1208 0.26 +1.0
1,366,445 - Psyr_1208 0.26 +0.4
1,366,445 - Psyr_1208 0.26 +0.3
1,366,445 - Psyr_1208 0.26 +0.1
1,366,445 - Psyr_1208 0.26 -0.3
1,366,445 - Psyr_1208 0.26 -0.2
1,366,445 - Psyr_1208 0.26 -2.0
1,366,445 - Psyr_1208 0.26 +0.0
1,366,445 - Psyr_1208 0.26 +0.4
1,366,445 - Psyr_1208 0.26 -0.4
1,366,445 - Psyr_1208 0.26 -0.8
1,366,445 - Psyr_1208 0.26 -0.8
1,366,565 + -0.2
1,366,707 + Psyr_1208 0.66 -0.4
1,366,707 + Psyr_1208 0.66 -1.5
1,366,707 + Psyr_1208 0.66 -0.5
1,366,707 + Psyr_1208 0.66 +0.0
1,366,708 - Psyr_1208 0.66 +0.3
1,366,708 - Psyr_1208 0.66 +0.8
1,366,708 - Psyr_1208 0.66 -0.2
1,366,708 - Psyr_1208 0.66 +0.2
1,366,708 - Psyr_1208 0.66 -1.0
1,366,708 - Psyr_1208 0.66 +0.6
1,366,708 - Psyr_1208 0.66 +0.1
1,366,708 - Psyr_1208 0.66 +1.2
1,366,708 - Psyr_1208 0.66 -0.5
1,366,708 - Psyr_1208 0.66 +0.8
1,366,762 + Psyr_1208 0.74 +1.1
1,366,762 + Psyr_1208 0.74 -0.7
1,366,762 + Psyr_1208 0.74 +1.6
1,366,762 + Psyr_1208 0.74 -0.9
1,366,762 + Psyr_1208 0.74 -0.5
1,366,763 - Psyr_1208 0.74 +0.8
1,366,763 - Psyr_1208 0.74 -0.1
1,366,763 - Psyr_1208 0.74 +1.1
1,366,763 - Psyr_1208 0.74 +0.6
1,367,277 + Psyr_1209 0.87 +0.1
1,367,278 - Psyr_1209 0.88 -1.2
1,367,307 + +0.7
1,367,307 + +0.5
1,367,308 - -0.2
1,367,308 - -0.4
1,367,320 + -1.0
1,367,321 - +3.4
1,367,656 - Psyr_1210 0.47 -0.3
1,367,656 - Psyr_1210 0.47 +0.2
1,367,656 - Psyr_1210 0.47 -2.7
1,367,757 + Psyr_1210 0.62 +0.5
1,367,757 + Psyr_1210 0.62 -0.2
1,367,802 + Psyr_1210 0.68 -0.8
1,367,802 + Psyr_1210 0.68 -1.2
1,367,803 - Psyr_1210 0.68 -1.3
1,367,803 - Psyr_1210 0.68 -1.0
1,367,864 + Psyr_1210 0.76 -1.3
1,367,864 + Psyr_1210 0.76 +1.1
1,367,865 - Psyr_1210 0.77 -0.8
1,368,362 + Psyr_1211 0.58 +1.7
1,368,362 + Psyr_1211 0.58 +2.2
1,368,363 - Psyr_1211 0.58 +0.7
1,368,363 - Psyr_1211 0.58 +1.3
1,368,455 + Psyr_1211 0.74 +0.5
1,368,455 + Psyr_1211 0.74 +0.7
1,368,455 + Psyr_1211 0.74 +0.8
1,368,455 + Psyr_1211 0.74 -0.5
1,368,455 + Psyr_1211 0.74 -0.1
1,368,455 + Psyr_1211 0.74 -0.4
1,368,455 + Psyr_1211 0.74 +0.0
1,368,455 + Psyr_1211 0.74 -0.4
1,368,455 + Psyr_1211 0.74 +0.0
1,368,456 - Psyr_1211 0.75 +0.5
1,368,456 - Psyr_1211 0.75 +0.4
1,368,456 - Psyr_1211 0.75 -0.7
1,368,456 - Psyr_1211 0.75 -1.4
1,368,456 - Psyr_1211 0.75 -0.5
1,368,609 + +0.4
1,368,610 - -1.7
1,368,716 + Psyr_1212 0.24 +1.3
1,368,862 + Psyr_1212 0.57 +1.2
1,368,863 - Psyr_1212 0.57 +0.3
1,368,905 + Psyr_1212 0.66 +0.7
1,368,906 - Psyr_1212 0.67 +1.8

Or see this region's nucleotide sequence