Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1104

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1102 and Psyr_1103 are separated by 98 nucleotidesPsyr_1103 and Psyr_1104 overlap by 4 nucleotidesPsyr_1104 and Psyr_1105 are separated by 116 nucleotides Psyr_1102: Psyr_1102 - conserved hypothetical protein, at 1,248,790 to 1,249,146 _1102 Psyr_1103: Psyr_1103 - Protein of unknown function DUF454, at 1,249,245 to 1,249,703 _1103 Psyr_1104: Psyr_1104 - Heme oxygenase, at 1,249,700 to 1,250,314 _1104 Psyr_1105: Psyr_1105 - TonB-dependent hemoglobin/transferrin/lactoferrin receptor:TonB-dependent heme/hemoglobin receptor, at 1,250,431 to 1,253,010 _1105 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1248.750 kb on + strandat 1248.751 kb on - strandat 1248.751 kb on - strandat 1248.791 kb on + strandat 1249.067 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.142 kb on + strandat 1249.142 kb on + strandat 1249.142 kb on + strandat 1249.142 kb on + strandat 1249.142 kb on + strandat 1249.143 kb on - strandat 1249.143 kb on - strandat 1249.254 kb on + strandat 1249.254 kb on + strandat 1249.255 kb on - strandat 1249.255 kb on - strandat 1249.255 kb on - strandat 1249.287 kb on + strandat 1249.287 kb on + strandat 1249.287 kb on + strandat 1249.288 kb on - strandat 1249.288 kb on - strandat 1249.321 kb on + strand, within Psyr_1103at 1249.321 kb on + strand, within Psyr_1103at 1249.322 kb on - strand, within Psyr_1103at 1249.322 kb on - strand, within Psyr_1103at 1249.435 kb on + strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.569 kb on + strand, within Psyr_1103at 1249.569 kb on + strand, within Psyr_1103at 1249.570 kb on - strand, within Psyr_1103at 1249.603 kb on - strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.650 kb on + strand, within Psyr_1103at 1249.681 kb on - strandat 1250.136 kb on + strand, within Psyr_1104at 1250.137 kb on - strand, within Psyr_1104at 1250.167 kb on - strand, within Psyr_1104at 1250.167 kb on - strand, within Psyr_1104at 1250.191 kb on - strand, within Psyr_1104at 1250.317 kb on + strandat 1250.318 kb on - strandat 1250.318 kb on - strandat 1250.349 kb on + strandat 1250.349 kb on + strandat 1250.350 kb on - strandat 1250.350 kb on - strandat 1250.559 kb on - strandat 1250.579 kb on + strandat 1250.579 kb on + strandat 1250.580 kb on - strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.843 kb on + strand, within Psyr_1105at 1250.844 kb on - strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1251.011 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.021 kb on - strand, within Psyr_1105at 1251.021 kb on - strand, within Psyr_1105at 1251.194 kb on + strand, within Psyr_1105at 1251.204 kb on - strand, within Psyr_1105at 1251.204 kb on - strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.213 kb on - strand, within Psyr_1105at 1251.213 kb on - strand, within Psyr_1105at 1251.230 kb on + strand, within Psyr_1105at 1251.230 kb on + strand, within Psyr_1105at 1251.230 kb on + strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,248,750 + +0.9
1,248,751 - +0.9
1,248,751 - -0.3
1,248,791 + +0.7
1,249,067 + Psyr_1102 0.78 +0.3
1,249,085 + Psyr_1102 0.83 +0.3
1,249,085 + Psyr_1102 0.83 +0.5
1,249,085 + Psyr_1102 0.83 +0.6
1,249,085 + Psyr_1102 0.83 +2.5
1,249,085 + Psyr_1102 0.83 +0.7
1,249,085 + Psyr_1102 0.83 +0.4
1,249,085 + Psyr_1102 0.83 -0.8
1,249,086 - Psyr_1102 0.83 +1.6
1,249,086 - Psyr_1102 0.83 +0.5
1,249,086 - Psyr_1102 0.83 -0.2
1,249,086 - Psyr_1102 0.83 +0.7
1,249,086 - Psyr_1102 0.83 -1.5
1,249,086 - Psyr_1102 0.83 -1.5
1,249,086 - Psyr_1102 0.83 -1.2
1,249,086 - Psyr_1102 0.83 -0.6
1,249,142 + -0.1
1,249,142 + -1.7
1,249,142 + -0.3
1,249,142 + +0.5
1,249,142 + +0.7
1,249,143 - +0.3
1,249,143 - -0.2
1,249,254 + -0.2
1,249,254 + -0.1
1,249,255 - +0.4
1,249,255 - +0.9
1,249,255 - +0.9
1,249,287 + +2.9
1,249,287 + +1.7
1,249,287 + -0.4
1,249,288 - -0.7
1,249,288 - -0.5
1,249,321 + Psyr_1103 0.17 +1.4
1,249,321 + Psyr_1103 0.17 -0.1
1,249,322 - Psyr_1103 0.17 +1.2
1,249,322 - Psyr_1103 0.17 -0.2
1,249,435 + Psyr_1103 0.41 +0.9
1,249,436 - Psyr_1103 0.42 -1.3
1,249,436 - Psyr_1103 0.42 -2.3
1,249,436 - Psyr_1103 0.42 +0.5
1,249,436 - Psyr_1103 0.42 -1.4
1,249,436 - Psyr_1103 0.42 -2.7
1,249,569 + Psyr_1103 0.71 -0.9
1,249,569 + Psyr_1103 0.71 +0.8
1,249,570 - Psyr_1103 0.71 -1.1
1,249,603 - Psyr_1103 0.78 +1.0
1,249,636 + Psyr_1103 0.85 -0.7
1,249,636 + Psyr_1103 0.85 +0.4
1,249,636 + Psyr_1103 0.85 -0.7
1,249,636 + Psyr_1103 0.85 -0.9
1,249,636 + Psyr_1103 0.85 -0.0
1,249,637 - Psyr_1103 0.85 -0.1
1,249,637 - Psyr_1103 0.85 +0.0
1,249,637 - Psyr_1103 0.85 -0.2
1,249,650 + Psyr_1103 0.88 -0.2
1,249,681 - -0.3
1,250,136 + Psyr_1104 0.71 +0.5
1,250,137 - Psyr_1104 0.71 +0.9
1,250,167 - Psyr_1104 0.76 -0.0
1,250,167 - Psyr_1104 0.76 +0.8
1,250,191 - Psyr_1104 0.80 +1.6
1,250,317 + -1.0
1,250,318 - +0.9
1,250,318 - +0.9
1,250,349 + -0.6
1,250,349 + -0.8
1,250,350 - -0.0
1,250,350 - +0.7
1,250,559 - +0.6
1,250,579 + +0.2
1,250,579 + -0.4
1,250,580 - +0.4
1,250,618 + -0.7
1,250,618 + +0.1
1,250,618 + +0.9
1,250,618 + -0.9
1,250,618 + -0.7
1,250,618 + -0.9
1,250,618 + -0.5
1,250,618 + -0.8
1,250,618 + +0.6
1,250,619 - -0.3
1,250,619 - +0.1
1,250,619 - -0.1
1,250,619 - +0.6
1,250,619 - -0.1
1,250,843 + Psyr_1105 0.16 -1.3
1,250,844 - Psyr_1105 0.16 -0.7
1,250,941 + Psyr_1105 0.20 -0.5
1,250,941 + Psyr_1105 0.20 +0.4
1,250,941 + Psyr_1105 0.20 +0.5
1,250,941 + Psyr_1105 0.20 +0.9
1,250,941 + Psyr_1105 0.20 -0.5
1,250,941 + Psyr_1105 0.20 -0.8
1,250,941 + Psyr_1105 0.20 -0.6
1,250,942 - Psyr_1105 0.20 +0.5
1,250,942 - Psyr_1105 0.20 +0.1
1,250,942 - Psyr_1105 0.20 -0.1
1,250,942 - Psyr_1105 0.20 -0.4
1,250,942 - Psyr_1105 0.20 +1.5
1,251,011 + Psyr_1105 0.22 +0.2
1,251,020 + Psyr_1105 0.23 -0.8
1,251,020 + Psyr_1105 0.23 -1.5
1,251,020 + Psyr_1105 0.23 +1.2
1,251,020 + Psyr_1105 0.23 -0.9
1,251,021 - Psyr_1105 0.23 +0.1
1,251,021 - Psyr_1105 0.23 -1.5
1,251,194 + Psyr_1105 0.30 -1.6
1,251,204 - Psyr_1105 0.30 +0.3
1,251,204 - Psyr_1105 0.30 +0.0
1,251,212 + Psyr_1105 0.30 -1.7
1,251,212 + Psyr_1105 0.30 -0.4
1,251,212 + Psyr_1105 0.30 -0.6
1,251,212 + Psyr_1105 0.30 -0.9
1,251,212 + Psyr_1105 0.30 +0.2
1,251,213 - Psyr_1105 0.30 -0.6
1,251,213 - Psyr_1105 0.30 +0.7
1,251,230 + Psyr_1105 0.31 -0.0
1,251,230 + Psyr_1105 0.31 +1.0
1,251,230 + Psyr_1105 0.31 +0.0
1,251,231 - Psyr_1105 0.31 -1.1
1,251,231 - Psyr_1105 0.31 +0.9
1,251,231 - Psyr_1105 0.31 -0.9
1,251,231 - Psyr_1105 0.31 +1.3

Or see this region's nucleotide sequence