Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1046 and Psyr_1047 overlap by 14 nucleotides Psyr_1047 and Psyr_1048 are separated by 25 nucleotides Psyr_1048 and Psyr_1049 are separated by 71 nucleotides
Psyr_1046: Psyr_1046 - Fusaric acid resistance protein conserved region, at 1,181,823 to 1,184,012
_1046
Psyr_1047: Psyr_1047 - conserved hypothetical protein, at 1,183,999 to 1,184,202
_1047
Psyr_1048: Psyr_1048 - Secretion protein HlyD, at 1,184,228 to 1,185,088
_1048
Psyr_1049: Psyr_1049 - Short-chain dehydrogenase/reductase SDR, at 1,185,160 to 1,185,978
_1049
Position (kb) 1183
1184
1185 Strain fitness (log2 ratio) -2
-1
0
1 at 1183.166 kb on + strand, within Psyr_1046 at 1183.167 kb on - strand, within Psyr_1046 at 1183.369 kb on - strand, within Psyr_1046 at 1183.377 kb on + strand, within Psyr_1046 at 1183.395 kb on + strand, within Psyr_1046 at 1183.395 kb on + strand, within Psyr_1046 at 1183.395 kb on + strand, within Psyr_1046 at 1183.445 kb on + strand, within Psyr_1046 at 1183.445 kb on + strand, within Psyr_1046 at 1183.446 kb on - strand, within Psyr_1046 at 1183.446 kb on - strand, within Psyr_1046 at 1183.726 kb on - strand, within Psyr_1046 at 1183.726 kb on - strand, within Psyr_1046 at 1183.911 kb on + strand at 1183.912 kb on - strand at 1183.966 kb on - strand at 1184.015 kb on + strand at 1184.015 kb on + strand at 1184.016 kb on - strand at 1184.016 kb on - strand at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.032 kb on + strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.033 kb on - strand, within Psyr_1047 at 1184.161 kb on - strand, within Psyr_1047 at 1184.161 kb on - strand, within Psyr_1047 at 1184.309 kb on + strand at 1184.309 kb on + strand at 1184.310 kb on - strand at 1184.310 kb on - strand at 1184.310 kb on - strand at 1184.706 kb on - strand, within Psyr_1048 at 1184.738 kb on + strand, within Psyr_1048 at 1184.738 kb on + strand, within Psyr_1048 at 1184.738 kb on + strand, within Psyr_1048 at 1184.738 kb on + strand, within Psyr_1048 at 1184.912 kb on + strand, within Psyr_1048 at 1184.912 kb on + strand, within Psyr_1048 at 1184.912 kb on + strand, within Psyr_1048 at 1184.913 kb on - strand, within Psyr_1048 at 1184.913 kb on - strand, within Psyr_1048 at 1184.913 kb on - strand, within Psyr_1048 at 1184.913 kb on - strand, within Psyr_1048 at 1185.089 kb on + strand at 1185.089 kb on + strand at 1185.090 kb on - strand at 1185.090 kb on - strand at 1185.090 kb on - strand at 1185.090 kb on - strand at 1185.090 kb on - strand at 1185.090 kb on - strand at 1185.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 1,183,166 + Psyr_1046 0.61 +0.9 1,183,167 - Psyr_1046 0.61 +1.3 1,183,369 - Psyr_1046 0.71 +0.5 1,183,377 + Psyr_1046 0.71 -0.1 1,183,395 + Psyr_1046 0.72 +0.9 1,183,395 + Psyr_1046 0.72 +1.1 1,183,395 + Psyr_1046 0.72 +0.6 1,183,445 + Psyr_1046 0.74 +0.6 1,183,445 + Psyr_1046 0.74 +0.4 1,183,446 - Psyr_1046 0.74 +0.2 1,183,446 - Psyr_1046 0.74 +0.8 1,183,726 - Psyr_1046 0.87 +0.3 1,183,726 - Psyr_1046 0.87 -0.2 1,183,911 + -0.1 1,183,912 - -0.3 1,183,966 - +0.5 1,184,015 + -1.4 1,184,015 + +0.9 1,184,016 - -0.5 1,184,016 - +0.4 1,184,032 + Psyr_1047 0.16 -1.4 1,184,032 + Psyr_1047 0.16 -1.9 1,184,032 + Psyr_1047 0.16 +0.9 1,184,032 + Psyr_1047 0.16 +0.0 1,184,032 + Psyr_1047 0.16 -2.0 1,184,032 + Psyr_1047 0.16 +0.1 1,184,032 + Psyr_1047 0.16 -1.0 1,184,032 + Psyr_1047 0.16 +0.2 1,184,032 + Psyr_1047 0.16 +0.5 1,184,032 + Psyr_1047 0.16 -0.8 1,184,032 + Psyr_1047 0.16 +0.1 1,184,032 + Psyr_1047 0.16 +0.0 1,184,032 + Psyr_1047 0.16 +0.6 1,184,033 - Psyr_1047 0.17 +0.0 1,184,033 - Psyr_1047 0.17 -0.4 1,184,033 - Psyr_1047 0.17 +0.2 1,184,033 - Psyr_1047 0.17 -0.6 1,184,033 - Psyr_1047 0.17 -0.0 1,184,033 - Psyr_1047 0.17 -0.6 1,184,033 - Psyr_1047 0.17 -0.1 1,184,033 - Psyr_1047 0.17 -0.4 1,184,033 - Psyr_1047 0.17 -1.2 1,184,033 - Psyr_1047 0.17 -0.1 1,184,033 - Psyr_1047 0.17 +0.1 1,184,033 - Psyr_1047 0.17 -0.9 1,184,161 - Psyr_1047 0.79 -0.4 1,184,161 - Psyr_1047 0.79 -1.1 1,184,309 + +0.5 1,184,309 + +1.0 1,184,310 - +0.3 1,184,310 - +0.9 1,184,310 - -1.5 1,184,706 - Psyr_1048 0.56 +0.2 1,184,738 + Psyr_1048 0.59 -1.5 1,184,738 + Psyr_1048 0.59 +0.9 1,184,738 + Psyr_1048 0.59 -0.8 1,184,738 + Psyr_1048 0.59 -0.7 1,184,912 + Psyr_1048 0.79 -0.1 1,184,912 + Psyr_1048 0.79 -0.5 1,184,912 + Psyr_1048 0.79 +0.3 1,184,913 - Psyr_1048 0.80 -1.0 1,184,913 - Psyr_1048 0.80 +0.3 1,184,913 - Psyr_1048 0.80 -0.7 1,184,913 - Psyr_1048 0.80 -0.6 1,185,089 + -1.1 1,185,089 + +0.9 1,185,090 - -1.1 1,185,090 - +0.6 1,185,090 - +1.5 1,185,090 - +0.9 1,185,090 - +0.7 1,185,090 - +0.9 1,185,144 + -0.7
Or see this region's nucleotide sequence