Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0855 and Psyr_0856 are separated by 144 nucleotides Psyr_0856 and Psyr_0857 overlap by 8 nucleotides Psyr_0857 and Psyr_0858 are separated by 10 nucleotides Psyr_0858 and Psyr_0859 are separated by 131 nucleotides
Psyr_0855: Psyr_0855 - conserved hypothetical protein, at 974,997 to 976,274
_0855
Psyr_0856: Psyr_0856 - conserved hypothetical protein, at 976,419 to 977,225
_0856
Psyr_0857: Psyr_0857 - [SSU ribosomal protein S18P]-alanine acetyltransferase, at 977,218 to 977,670
_0857
Psyr_0858: Psyr_0858 - conserved hypothetical protein, at 977,681 to 978,088
_0858
Psyr_0859: Psyr_0859 - Carbonate dehydratase, at 978,220 to 978,858
_0859
Position (kb) 977
978 Strain fitness (log2 ratio) -2
-1
0
1
2 at 976.313 kb on + strand at 976.313 kb on + strand at 976.313 kb on + strand at 976.313 kb on + strand at 976.332 kb on + strand at 976.332 kb on + strand at 976.332 kb on + strand at 976.333 kb on - strand at 976.333 kb on - strand at 976.333 kb on - strand at 976.333 kb on - strand at 976.380 kb on + strand at 976.380 kb on + strand at 976.394 kb on + strand at 976.399 kb on + strand at 977.231 kb on + strand at 977.285 kb on - strand, within Psyr_0857 at 977.285 kb on - strand, within Psyr_0857 at 977.566 kb on + strand, within Psyr_0857 at 977.567 kb on - strand, within Psyr_0857 at 977.592 kb on - strand, within Psyr_0857 at 977.609 kb on - strand, within Psyr_0857 at 977.668 kb on + strand at 977.669 kb on - strand at 977.669 kb on - strand at 977.669 kb on - strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.671 kb on + strand at 977.672 kb on - strand at 977.672 kb on - strand at 977.672 kb on - strand at 977.672 kb on - strand at 977.672 kb on - strand at 977.962 kb on + strand, within Psyr_0858 at 977.962 kb on + strand, within Psyr_0858 at 977.963 kb on - strand, within Psyr_0858 at 978.230 kb on + strand at 978.230 kb on + strand at 978.231 kb on - strand at 978.272 kb on + strand at 978.273 kb on - strand at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.479 kb on + strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.480 kb on - strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.598 kb on + strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.599 kb on - strand, within Psyr_0859 at 978.601 kb on + strand, within Psyr_0859
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 976,313 + -0.3 976,313 + -0.1 976,313 + -0.1 976,313 + +0.4 976,332 + +0.4 976,332 + -0.5 976,332 + -0.5 976,333 - -0.7 976,333 - +1.9 976,333 - -0.1 976,333 - -0.5 976,380 + +0.2 976,380 + -1.9 976,394 + +1.1 976,399 + +0.6 977,231 + -0.4 977,285 - Psyr_0857 0.15 -0.9 977,285 - Psyr_0857 0.15 -0.7 977,566 + Psyr_0857 0.77 -0.4 977,567 - Psyr_0857 0.77 -0.2 977,592 - Psyr_0857 0.83 -0.2 977,609 - Psyr_0857 0.86 -1.4 977,668 + -0.1 977,669 - +0.5 977,669 - +0.5 977,669 - +0.1 977,671 + +0.4 977,671 + +0.3 977,671 + +1.5 977,671 + -1.0 977,671 + +0.6 977,671 + +0.9 977,671 + +0.1 977,671 + +1.4 977,672 - -0.8 977,672 - +0.9 977,672 - -2.1 977,672 - +1.6 977,672 - +1.6 977,962 + Psyr_0858 0.69 +0.1 977,962 + Psyr_0858 0.69 +0.0 977,963 - Psyr_0858 0.69 +0.5 978,230 + -1.2 978,230 + +0.3 978,231 - -0.2 978,272 + +0.1 978,273 - +1.6 978,479 + Psyr_0859 0.41 -0.4 978,479 + Psyr_0859 0.41 +0.9 978,479 + Psyr_0859 0.41 +1.4 978,479 + Psyr_0859 0.41 -0.6 978,480 - Psyr_0859 0.41 +1.4 978,480 - Psyr_0859 0.41 +1.1 978,480 - Psyr_0859 0.41 -0.3 978,598 + Psyr_0859 0.59 +0.7 978,598 + Psyr_0859 0.59 -0.6 978,598 + Psyr_0859 0.59 -0.7 978,598 + Psyr_0859 0.59 -0.6 978,598 + Psyr_0859 0.59 +0.7 978,599 - Psyr_0859 0.59 +0.3 978,599 - Psyr_0859 0.59 +0.7 978,599 - Psyr_0859 0.59 -0.4 978,599 - Psyr_0859 0.59 +0.9 978,601 + Psyr_0859 0.60 +0.6
Or see this region's nucleotide sequence