Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0815 and Psyr_0816 are separated by 354 nucleotides Psyr_0816 and Psyr_0817 are separated by 203 nucleotides Psyr_0817 and Psyr_0818 are separated by 15 nucleotides
Psyr_0815: Psyr_0815 - nicotinate-nucleotide pyrophosphorylase (carboxylating), at 919,536 to 920,384
_0815
Psyr_0816: Psyr_0816 - conserved hypothetical protein, at 920,739 to 922,994
_0816
Psyr_0817: Psyr_0817 - N-acetylmuramoyl-L-alanine amidase, family 2, at 923,198 to 923,746
_0817
Psyr_0818: Psyr_0818 - ampE protein, at 923,762 to 924,598
_0818
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 919.894 kb on + strand, within Psyr_0815 at 919.939 kb on + strand, within Psyr_0815 at 919.939 kb on + strand, within Psyr_0815 at 919.939 kb on + strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 919.940 kb on - strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.023 kb on + strand, within Psyr_0815 at 920.024 kb on - strand, within Psyr_0815 at 920.024 kb on - strand, within Psyr_0815 at 920.238 kb on - strand, within Psyr_0815 at 920.374 kb on - strand at 920.414 kb on + strand at 920.414 kb on + strand at 920.415 kb on - strand at 920.415 kb on - strand at 920.415 kb on - strand at 920.416 kb on + strand at 920.417 kb on - strand at 920.417 kb on - strand at 920.417 kb on - strand at 920.462 kb on + strand at 920.463 kb on - strand at 920.614 kb on + strand at 920.626 kb on + strand at 920.626 kb on + strand at 920.626 kb on + strand at 920.626 kb on + strand at 920.627 kb on - strand at 920.627 kb on - strand at 920.688 kb on - strand at 920.688 kb on - strand at 920.737 kb on + strand at 920.737 kb on + strand at 920.737 kb on + strand at 920.737 kb on + strand at 920.738 kb on - strand at 920.738 kb on - strand at 920.738 kb on - strand at 920.759 kb on - strand at 920.785 kb on + strand at 920.816 kb on - strand at 920.995 kb on + strand, within Psyr_0816 at 920.995 kb on + strand, within Psyr_0816 at 920.995 kb on + strand, within Psyr_0816 at 920.995 kb on + strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 920.996 kb on - strand, within Psyr_0816 at 921.021 kb on + strand, within Psyr_0816 at 921.022 kb on - strand, within Psyr_0816 at 921.022 kb on - strand, within Psyr_0816 at 921.022 kb on - strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.348 kb on + strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.349 kb on - strand, within Psyr_0816 at 921.376 kb on - strand, within Psyr_0816 at 921.376 kb on - strand, within Psyr_0816 at 921.376 kb on - strand, within Psyr_0816 at 921.412 kb on + strand, within Psyr_0816 at 921.413 kb on - strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.672 kb on + strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 921.673 kb on - strand, within Psyr_0816 at 922.002 kb on + strand, within Psyr_0816 at 922.003 kb on - strand, within Psyr_0816 at 922.003 kb on - strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.210 kb on + strand, within Psyr_0816 at 922.211 kb on - strand, within Psyr_0816 at 922.702 kb on + strand, within Psyr_0816 at 922.703 kb on - strand, within Psyr_0816 at 922.703 kb on - strand, within Psyr_0816 at 922.796 kb on + strand at 922.796 kb on + strand at 922.796 kb on + strand at 922.797 kb on - strand at 922.797 kb on - strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.830 kb on + strand at 922.831 kb on - strand at 922.913 kb on - strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.916 kb on + strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 922.917 kb on - strand at 923.031 kb on + strand at 923.031 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.094 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.108 kb on + strand at 923.109 kb on - strand at 923.159 kb on - strand at 923.168 kb on + strand at 923.169 kb on - strand at 923.172 kb on + strand at 923.172 kb on + strand at 923.173 kb on - strand at 923.173 kb on - strand at 923.388 kb on - strand, within Psyr_0817 at 923.588 kb on + strand, within Psyr_0817 at 923.589 kb on - strand, within Psyr_0817 at 923.653 kb on + strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.654 kb on - strand, within Psyr_0817 at 923.779 kb on - strand at 923.976 kb on - strand, within Psyr_0818
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 919,894 + Psyr_0815 0.42 +0.1 919,939 + Psyr_0815 0.47 -1.4 919,939 + Psyr_0815 0.47 +1.3 919,939 + Psyr_0815 0.47 -0.3 919,940 - Psyr_0815 0.48 +0.6 919,940 - Psyr_0815 0.48 +0.1 919,940 - Psyr_0815 0.48 +1.9 919,940 - Psyr_0815 0.48 +0.2 920,023 + Psyr_0815 0.57 +0.9 920,023 + Psyr_0815 0.57 -0.1 920,023 + Psyr_0815 0.57 +1.3 920,023 + Psyr_0815 0.57 +0.4 920,023 + Psyr_0815 0.57 +0.5 920,024 - Psyr_0815 0.57 +0.7 920,024 - Psyr_0815 0.57 +1.9 920,238 - Psyr_0815 0.83 +0.9 920,374 - +1.5 920,414 + -0.5 920,414 + +0.7 920,415 - +1.2 920,415 - -2.6 920,415 - -0.1 920,416 + +0.4 920,417 - -0.1 920,417 - -0.1 920,417 - -0.1 920,462 + -1.0 920,463 - +1.6 920,614 + +0.2 920,626 + +1.0 920,626 + -0.6 920,626 + +0.3 920,626 + +0.1 920,627 - -0.5 920,627 - +1.4 920,688 - +0.3 920,688 - +1.9 920,737 + +0.5 920,737 + +0.4 920,737 + -0.1 920,737 + -0.6 920,738 - +0.3 920,738 - -0.4 920,738 - +0.1 920,759 - +1.3 920,785 + -0.6 920,816 - -0.7 920,995 + Psyr_0816 0.11 +0.3 920,995 + Psyr_0816 0.11 -0.2 920,995 + Psyr_0816 0.11 +0.3 920,995 + Psyr_0816 0.11 +0.1 920,996 - Psyr_0816 0.11 +1.1 920,996 - Psyr_0816 0.11 +0.7 920,996 - Psyr_0816 0.11 -0.7 920,996 - Psyr_0816 0.11 -0.5 921,021 + Psyr_0816 0.12 +0.2 921,022 - Psyr_0816 0.13 -0.7 921,022 - Psyr_0816 0.13 +0.0 921,022 - Psyr_0816 0.13 +1.5 921,348 + Psyr_0816 0.27 +0.3 921,348 + Psyr_0816 0.27 +2.7 921,348 + Psyr_0816 0.27 -0.2 921,348 + Psyr_0816 0.27 -1.9 921,348 + Psyr_0816 0.27 +1.2 921,348 + Psyr_0816 0.27 +0.1 921,349 - Psyr_0816 0.27 -0.3 921,349 - Psyr_0816 0.27 +0.6 921,349 - Psyr_0816 0.27 -0.4 921,349 - Psyr_0816 0.27 +0.1 921,349 - Psyr_0816 0.27 -1.3 921,349 - Psyr_0816 0.27 +0.2 921,376 - Psyr_0816 0.28 +1.0 921,376 - Psyr_0816 0.28 +0.6 921,376 - Psyr_0816 0.28 +0.4 921,412 + Psyr_0816 0.30 -0.0 921,413 - Psyr_0816 0.30 -0.1 921,672 + Psyr_0816 0.41 -0.3 921,672 + Psyr_0816 0.41 +0.3 921,672 + Psyr_0816 0.41 +0.5 921,672 + Psyr_0816 0.41 +0.8 921,672 + Psyr_0816 0.41 +1.0 921,672 + Psyr_0816 0.41 +1.9 921,672 + Psyr_0816 0.41 +0.6 921,672 + Psyr_0816 0.41 +0.2 921,672 + Psyr_0816 0.41 +0.4 921,672 + Psyr_0816 0.41 +0.9 921,672 + Psyr_0816 0.41 +0.4 921,672 + Psyr_0816 0.41 -0.3 921,672 + Psyr_0816 0.41 -0.4 921,672 + Psyr_0816 0.41 +0.6 921,672 + Psyr_0816 0.41 -0.2 921,672 + Psyr_0816 0.41 -0.3 921,672 + Psyr_0816 0.41 +0.9 921,673 - Psyr_0816 0.41 +0.9 921,673 - Psyr_0816 0.41 +0.2 921,673 - Psyr_0816 0.41 -1.0 921,673 - Psyr_0816 0.41 +0.2 921,673 - Psyr_0816 0.41 +0.0 921,673 - Psyr_0816 0.41 -1.3 921,673 - Psyr_0816 0.41 +0.2 921,673 - Psyr_0816 0.41 +0.1 921,673 - Psyr_0816 0.41 +0.2 921,673 - Psyr_0816 0.41 +0.7 921,673 - Psyr_0816 0.41 +0.9 921,673 - Psyr_0816 0.41 +0.3 921,673 - Psyr_0816 0.41 +2.5 921,673 - Psyr_0816 0.41 +0.4 921,673 - Psyr_0816 0.41 +0.6 921,673 - Psyr_0816 0.41 +1.3 921,673 - Psyr_0816 0.41 +0.9 921,673 - Psyr_0816 0.41 +1.1 922,002 + Psyr_0816 0.56 +1.4 922,003 - Psyr_0816 0.56 -0.1 922,003 - Psyr_0816 0.56 +0.2 922,210 + Psyr_0816 0.65 -0.1 922,210 + Psyr_0816 0.65 +0.7 922,210 + Psyr_0816 0.65 -1.1 922,211 - Psyr_0816 0.65 -0.4 922,702 + Psyr_0816 0.87 +0.6 922,703 - Psyr_0816 0.87 +0.7 922,703 - Psyr_0816 0.87 -0.2 922,796 + -1.0 922,796 + -0.1 922,796 + -0.5 922,797 - +0.4 922,797 - +0.5 922,830 + +0.6 922,830 + +0.4 922,830 + +0.4 922,830 + +1.9 922,831 - +1.4 922,913 - -0.7 922,916 + -0.9 922,916 + +0.2 922,916 + -0.3 922,916 + +0.3 922,916 + -0.2 922,916 + +0.4 922,916 + +0.4 922,917 - -0.2 922,917 - -0.1 922,917 - -0.2 922,917 - -0.7 923,031 + +1.3 923,031 + -2.1 923,094 + +0.3 923,094 + +0.8 923,094 + +2.9 923,094 + +0.4 923,094 + +0.1 923,094 + +0.2 923,108 + +1.2 923,108 + +1.8 923,108 + -0.8 923,108 + +0.4 923,108 + +0.8 923,108 + +0.5 923,108 + +1.2 923,109 - +0.4 923,159 - +0.5 923,168 + +0.6 923,169 - +0.2 923,172 + -0.8 923,172 + +0.0 923,173 - +1.6 923,173 - -0.8 923,388 - Psyr_0817 0.35 +0.8 923,588 + Psyr_0817 0.71 -0.9 923,589 - Psyr_0817 0.71 +0.6 923,653 + Psyr_0817 0.83 +0.3 923,654 - Psyr_0817 0.83 -0.5 923,654 - Psyr_0817 0.83 -0.2 923,654 - Psyr_0817 0.83 -0.9 923,654 - Psyr_0817 0.83 -1.6 923,779 - -1.1 923,976 - Psyr_0818 0.26 +0.4
Or see this region's nucleotide sequence