Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0689

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0688 and Psyr_0689 are separated by 158 nucleotidesPsyr_0689 and Psyr_0690 are separated by 33 nucleotides Psyr_0688: Psyr_0688 - transcriptional regulator, LysR family, at 791,479 to 792,426 _0688 Psyr_0689: Psyr_0689 - methylmalonate-semialdehyde dehydrogenase (acylating), at 792,585 to 794,111 _0689 Psyr_0690: Psyr_0690 - 3-hydroxyisobutyrate dehydrogenase, at 794,145 to 795,032 _0690 Position (kb) 792 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2 3at 791.603 kb on + strand, within Psyr_0688at 791.603 kb on + strand, within Psyr_0688at 791.603 kb on + strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.604 kb on - strand, within Psyr_0688at 791.724 kb on - strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.786 kb on + strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.787 kb on - strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.822 kb on + strand, within Psyr_0688at 791.823 kb on - strand, within Psyr_0688at 791.823 kb on - strand, within Psyr_0688at 791.823 kb on - strand, within Psyr_0688at 791.885 kb on + strand, within Psyr_0688at 791.901 kb on - strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.939 kb on + strand, within Psyr_0688at 791.940 kb on - strandat 791.940 kb on - strand, within Psyr_0688at 791.940 kb on - strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.001 kb on + strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.002 kb on - strand, within Psyr_0688at 792.194 kb on + strand, within Psyr_0688at 792.195 kb on - strand, within Psyr_0688at 792.301 kb on + strand, within Psyr_0688at 792.311 kb on + strand, within Psyr_0688at 792.311 kb on + strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.312 kb on - strand, within Psyr_0688at 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.472 kb on + strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.473 kb on - strandat 792.629 kb on - strandat 792.812 kb on + strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.813 kb on - strand, within Psyr_0689at 792.863 kb on + strand, within Psyr_0689at 792.864 kb on - strand, within Psyr_0689at 792.875 kb on - strand, within Psyr_0689at 792.921 kb on - strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.017 kb on + strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.018 kb on - strand, within Psyr_0689at 793.020 kb on - strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.121 kb on + strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.122 kb on - strand, within Psyr_0689at 793.317 kb on + strand, within Psyr_0689at 793.317 kb on + strand, within Psyr_0689at 793.387 kb on + strand, within Psyr_0689at 793.427 kb on - strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.925 kb on + strand, within Psyr_0689at 793.926 kb on - strand, within Psyr_0689at 794.002 kb on - strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.174 kb on + strandat 794.365 kb on - strand, within Psyr_0690at 794.762 kb on + strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.796 kb on + strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.955 kb on + strandat 794.956 kb on - strandat 795.030 kb on + strandat 795.030 kb on + strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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791,603 + Psyr_0688 0.13 -0.1
791,603 + Psyr_0688 0.13 -0.7
791,603 + Psyr_0688 0.13 +0.3
791,604 - Psyr_0688 0.13 -0.2
791,604 - Psyr_0688 0.13 +0.4
791,604 - Psyr_0688 0.13 -1.0
791,604 - Psyr_0688 0.13 -0.5
791,604 - Psyr_0688 0.13 -2.2
791,604 - Psyr_0688 0.13 +0.8
791,724 - Psyr_0688 0.26 +0.2
791,786 + Psyr_0688 0.32 +1.6
791,786 + Psyr_0688 0.32 -0.5
791,786 + Psyr_0688 0.32 +0.1
791,786 + Psyr_0688 0.32 -0.3
791,786 + Psyr_0688 0.32 -1.2
791,786 + Psyr_0688 0.32 -0.5
791,786 + Psyr_0688 0.32 +0.4
791,786 + Psyr_0688 0.32 +1.6
791,786 + Psyr_0688 0.32 +0.8
791,787 - Psyr_0688 0.32 +2.5
791,787 - Psyr_0688 0.32 +0.4
791,787 - Psyr_0688 0.32 +1.2
791,787 - Psyr_0688 0.32 -1.9
791,787 - Psyr_0688 0.32 -1.5
791,787 - Psyr_0688 0.32 -1.3
791,787 - Psyr_0688 0.32 -2.1
791,787 - Psyr_0688 0.32 +0.1
791,787 - Psyr_0688 0.32 -0.8
791,787 - Psyr_0688 0.32 +0.7
791,787 - Psyr_0688 0.32 -0.9
791,822 + Psyr_0688 0.36 -1.2
791,822 + Psyr_0688 0.36 +0.5
791,822 + Psyr_0688 0.36 -0.3
791,822 + Psyr_0688 0.36 +0.5
791,823 - Psyr_0688 0.36 -0.4
791,823 - Psyr_0688 0.36 -1.2
791,823 - Psyr_0688 0.36 +1.2
791,885 + Psyr_0688 0.43 -0.9
791,901 - Psyr_0688 0.45 +1.3
791,939 + Psyr_0688 0.49 -0.7
791,939 + Psyr_0688 0.49 +0.2
791,939 + Psyr_0688 0.49 -0.5
791,939 + Psyr_0688 0.49 -0.1
791,939 + Psyr_0688 0.49 +0.2
791,940 - +3.5
791,940 - Psyr_0688 0.49 -0.4
791,940 - Psyr_0688 0.49 -0.7
792,001 + Psyr_0688 0.55 +0.6
792,001 + Psyr_0688 0.55 +0.8
792,001 + Psyr_0688 0.55 +0.7
792,001 + Psyr_0688 0.55 +0.2
792,001 + Psyr_0688 0.55 +1.1
792,002 - Psyr_0688 0.55 +0.5
792,002 - Psyr_0688 0.55 +1.7
792,002 - Psyr_0688 0.55 -0.2
792,002 - Psyr_0688 0.55 +0.2
792,194 + Psyr_0688 0.75 +1.1
792,195 - Psyr_0688 0.76 +0.8
792,301 + Psyr_0688 0.87 -0.5
792,311 + Psyr_0688 0.88 -0.3
792,311 + Psyr_0688 0.88 +0.9
792,312 - Psyr_0688 0.88 -1.4
792,312 - Psyr_0688 0.88 +0.8
792,312 - Psyr_0688 0.88 +1.1
792,312 - Psyr_0688 0.88 -0.3
792,472 + +0.2
792,472 + -1.4
792,472 + -0.2
792,472 + +0.9
792,472 + -0.6
792,472 + -0.2
792,473 - -0.1
792,473 - +0.0
792,473 - -0.5
792,473 - -2.0
792,473 - +0.9
792,629 - -0.3
792,812 + Psyr_0689 0.15 +1.2
792,813 - Psyr_0689 0.15 +0.1
792,813 - Psyr_0689 0.15 +0.3
792,813 - Psyr_0689 0.15 +2.9
792,813 - Psyr_0689 0.15 +0.9
792,863 + Psyr_0689 0.18 -0.1
792,864 - Psyr_0689 0.18 +0.8
792,875 - Psyr_0689 0.19 +0.4
792,921 - Psyr_0689 0.22 +1.2
793,017 + Psyr_0689 0.28 -1.1
793,017 + Psyr_0689 0.28 -0.8
793,017 + Psyr_0689 0.28 +0.7
793,017 + Psyr_0689 0.28 +0.7
793,017 + Psyr_0689 0.28 -0.4
793,017 + Psyr_0689 0.28 +0.3
793,017 + Psyr_0689 0.28 +0.5
793,017 + Psyr_0689 0.28 -0.7
793,017 + Psyr_0689 0.28 +0.0
793,018 - Psyr_0689 0.28 -0.4
793,018 - Psyr_0689 0.28 +0.1
793,018 - Psyr_0689 0.28 -0.5
793,018 - Psyr_0689 0.28 +0.8
793,018 - Psyr_0689 0.28 +1.3
793,018 - Psyr_0689 0.28 +0.5
793,018 - Psyr_0689 0.28 +0.9
793,018 - Psyr_0689 0.28 -0.4
793,018 - Psyr_0689 0.28 -0.2
793,018 - Psyr_0689 0.28 +0.9
793,018 - Psyr_0689 0.28 +1.2
793,018 - Psyr_0689 0.28 -0.3
793,018 - Psyr_0689 0.28 -1.0
793,018 - Psyr_0689 0.28 +0.7
793,018 - Psyr_0689 0.28 +0.3
793,018 - Psyr_0689 0.28 +2.5
793,018 - Psyr_0689 0.28 -0.2
793,020 - Psyr_0689 0.28 -0.5
793,121 + Psyr_0689 0.35 -0.7
793,121 + Psyr_0689 0.35 +2.7
793,121 + Psyr_0689 0.35 -0.0
793,121 + Psyr_0689 0.35 +0.3
793,121 + Psyr_0689 0.35 +0.0
793,121 + Psyr_0689 0.35 +1.5
793,121 + Psyr_0689 0.35 -0.5
793,121 + Psyr_0689 0.35 +0.8
793,122 - Psyr_0689 0.35 +0.8
793,122 - Psyr_0689 0.35 +3.7
793,122 - Psyr_0689 0.35 -0.5
793,122 - Psyr_0689 0.35 +0.9
793,122 - Psyr_0689 0.35 +0.4
793,122 - Psyr_0689 0.35 -0.8
793,122 - Psyr_0689 0.35 -0.9
793,122 - Psyr_0689 0.35 +0.4
793,317 + Psyr_0689 0.48 +0.3
793,317 + Psyr_0689 0.48 +1.7
793,387 + Psyr_0689 0.53 +0.2
793,427 - Psyr_0689 0.55 +1.9
793,749 + Psyr_0689 0.76 +0.7
793,749 + Psyr_0689 0.76 -0.1
793,749 + Psyr_0689 0.76 +1.3
793,749 + Psyr_0689 0.76 +0.5
793,749 + Psyr_0689 0.76 -0.2
793,749 + Psyr_0689 0.76 -0.4
793,750 - Psyr_0689 0.76 -0.2
793,750 - Psyr_0689 0.76 +0.6
793,750 - Psyr_0689 0.76 +0.3
793,925 + Psyr_0689 0.88 -0.7
793,926 - Psyr_0689 0.88 +0.3
794,002 - +1.4
794,025 + -0.9
794,025 + +0.9
794,025 + +0.0
794,025 + +0.9
794,025 + -0.8
794,025 + +1.9
794,025 + +0.4
794,026 - -0.5
794,026 - +0.3
794,026 - +0.7
794,026 - +0.9
794,026 - +1.0
794,026 - +0.4
794,026 - +0.2
794,174 + -0.8
794,365 - Psyr_0690 0.25 +0.8
794,762 + Psyr_0690 0.69 -1.3
794,763 - Psyr_0690 0.70 -0.7
794,763 - Psyr_0690 0.70 -1.4
794,796 + Psyr_0690 0.73 +1.9
794,797 - Psyr_0690 0.73 -0.7
794,797 - Psyr_0690 0.73 +2.7
794,797 - Psyr_0690 0.73 -0.2
794,797 - Psyr_0690 0.73 +0.4
794,797 - Psyr_0690 0.73 +0.4
794,797 - Psyr_0690 0.73 +0.1
794,955 + +0.3
794,956 - +1.8
795,030 + +1.0
795,030 + +0.7
795,031 - +0.1
795,031 - +1.7
795,031 - +2.9
795,031 - +0.8
795,031 - +1.9
795,031 - -0.5

Or see this region's nucleotide sequence