Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0642

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0640 and Psyr_0641 are separated by 19 nucleotidesPsyr_0641 and Psyr_0642 overlap by 4 nucleotidesPsyr_0642 and Psyr_0643 are separated by 120 nucleotides Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260 _0640 Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029 _0641 Psyr_0642: Psyr_0642 - conserved hypothetical protein, at 730,026 to 730,331 _0642 Psyr_0643: Psyr_0643 - MaoC-like dehydratase, at 730,452 to 731,312 _0643 Position (kb) 730 731Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 729.178 kb on + strand, within Psyr_0640at 729.178 kb on + strand, within Psyr_0640at 729.179 kb on - strand, within Psyr_0640at 729.182 kb on + strand, within Psyr_0640at 729.240 kb on + strandat 729.240 kb on + strandat 729.240 kb on + strandat 729.240 kb on + strandat 729.241 kb on - strandat 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.407 kb on + strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.408 kb on - strand, within Psyr_0641at 729.419 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.597 kb on - strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.707 kb on + strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.708 kb on - strand, within Psyr_0641at 729.896 kb on - strand, within Psyr_0641at 729.943 kb on + strand, within Psyr_0641at 729.977 kb on + strandat 729.977 kb on + strandat 729.978 kb on - strandat 729.978 kb on - strandat 730.117 kb on + strand, within Psyr_0642at 730.117 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.206 kb on + strand, within Psyr_0642at 730.207 kb on - strand, within Psyr_0642at 730.352 kb on + strandat 730.352 kb on + strandat 730.352 kb on + strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.750 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.762 kb on - strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 731.110 kb on + strand, within Psyr_0643at 731.110 kb on + strand, within Psyr_0643

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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729,178 + Psyr_0640 0.87 +0.3
729,178 + Psyr_0640 0.87 -1.1
729,179 - Psyr_0640 0.87 -0.4
729,182 + Psyr_0640 0.88 +1.8
729,240 + +0.7
729,240 + +0.5
729,240 + +0.2
729,240 + +0.6
729,241 - -2.2
729,407 + Psyr_0641 0.17 +0.1
729,407 + Psyr_0641 0.17 -0.3
729,407 + Psyr_0641 0.17 +0.6
729,407 + Psyr_0641 0.17 -0.6
729,407 + Psyr_0641 0.17 -0.2
729,407 + Psyr_0641 0.17 +0.0
729,407 + Psyr_0641 0.17 -1.0
729,407 + Psyr_0641 0.17 -0.6
729,407 + Psyr_0641 0.17 +0.9
729,407 + Psyr_0641 0.17 +0.2
729,407 + Psyr_0641 0.17 -0.6
729,407 + Psyr_0641 0.17 -0.9
729,407 + Psyr_0641 0.17 +0.2
729,408 - Psyr_0641 0.17 -0.1
729,408 - Psyr_0641 0.17 -1.1
729,408 - Psyr_0641 0.17 -1.1
729,408 - Psyr_0641 0.17 +0.4
729,408 - Psyr_0641 0.17 -0.1
729,408 - Psyr_0641 0.17 +0.5
729,408 - Psyr_0641 0.17 -0.1
729,419 - Psyr_0641 0.19 -1.1
729,597 - Psyr_0641 0.42 +1.2
729,597 - Psyr_0641 0.42 -0.9
729,707 + Psyr_0641 0.57 +0.4
729,707 + Psyr_0641 0.57 -2.8
729,707 + Psyr_0641 0.57 +0.4
729,707 + Psyr_0641 0.57 +0.0
729,707 + Psyr_0641 0.57 +1.4
729,707 + Psyr_0641 0.57 +1.4
729,707 + Psyr_0641 0.57 +1.9
729,707 + Psyr_0641 0.57 -0.3
729,707 + Psyr_0641 0.57 +0.2
729,707 + Psyr_0641 0.57 -0.9
729,707 + Psyr_0641 0.57 +0.4
729,707 + Psyr_0641 0.57 -0.4
729,707 + Psyr_0641 0.57 -1.6
729,708 - Psyr_0641 0.57 -0.1
729,708 - Psyr_0641 0.57 -0.5
729,708 - Psyr_0641 0.57 -0.1
729,708 - Psyr_0641 0.57 +0.5
729,708 - Psyr_0641 0.57 +1.9
729,708 - Psyr_0641 0.57 +1.1
729,708 - Psyr_0641 0.57 -1.1
729,708 - Psyr_0641 0.57 +1.2
729,708 - Psyr_0641 0.57 +0.4
729,708 - Psyr_0641 0.57 +1.9
729,896 - Psyr_0641 0.82 -0.3
729,943 + Psyr_0641 0.88 +0.0
729,977 + +0.3
729,977 + -0.4
729,978 - -0.7
729,978 - +0.7
730,117 + Psyr_0642 0.30 -1.3
730,117 + Psyr_0642 0.30 -1.2
730,206 + Psyr_0642 0.59 -0.3
730,206 + Psyr_0642 0.59 -0.7
730,206 + Psyr_0642 0.59 -2.5
730,207 - Psyr_0642 0.59 -0.1
730,352 + -0.1
730,352 + -0.7
730,352 + -1.4
730,353 - -0.4
730,353 - +0.4
730,353 - -1.1
730,353 - -1.0
730,484 + +0.1
730,484 + -1.6
730,484 + +0.9
730,485 - +0.7
730,485 - +0.2
730,485 - +0.2
730,750 + Psyr_0643 0.35 +0.5
730,761 + Psyr_0643 0.36 +1.3
730,761 + Psyr_0643 0.36 +2.5
730,762 - Psyr_0643 0.36 -1.1
730,975 + Psyr_0643 0.61 -0.5
730,975 + Psyr_0643 0.61 -0.2
730,975 + Psyr_0643 0.61 -1.0
730,975 + Psyr_0643 0.61 -1.3
730,975 + Psyr_0643 0.61 -0.6
730,975 + Psyr_0643 0.61 +0.5
730,975 + Psyr_0643 0.61 +0.3
730,975 + Psyr_0643 0.61 -0.3
730,976 - Psyr_0643 0.61 +0.8
730,976 - Psyr_0643 0.61 +0.4
730,976 - Psyr_0643 0.61 +0.3
730,976 - Psyr_0643 0.61 -0.1
730,976 - Psyr_0643 0.61 -1.1
730,976 - Psyr_0643 0.61 +0.1
730,976 - Psyr_0643 0.61 +0.3
730,976 - Psyr_0643 0.61 -0.2
730,976 - Psyr_0643 0.61 +2.1
730,976 - Psyr_0643 0.61 +0.0
730,976 - Psyr_0643 0.61 -1.1
731,110 + Psyr_0643 0.76 +2.1
731,110 + Psyr_0643 0.76 +1.9

Or see this region's nucleotide sequence