Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0531 and Psyr_0532 are separated by 30 nucleotides Psyr_0532 and Psyr_0533 are separated by 31 nucleotides Psyr_0533 and Psyr_0534 overlap by 11 nucleotides
Psyr_0531: Psyr_0531 - LmbE-like protein, at 599,742 to 601,151
_0531
Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138
_0532
Psyr_0533: Psyr_0533 - conserved hypothetical protein, at 602,170 to 602,943
_0533
Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102
_0534
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 600.824 kb on - strand, within Psyr_0531 at 600.834 kb on + strand, within Psyr_0531 at 601.166 kb on + strand at 601.167 kb on - strand at 601.192 kb on + strand at 601.192 kb on + strand at 601.193 kb on - strand at 601.193 kb on - strand at 601.237 kb on - strand at 601.441 kb on - strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.449 kb on + strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.450 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.465 kb on - strand, within Psyr_0532 at 601.588 kb on - strand, within Psyr_0532 at 601.669 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.750 kb on - strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.809 kb on + strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 601.810 kb on - strand, within Psyr_0532 at 602.000 kb on + strand, within Psyr_0532 at 602.030 kb on + strand, within Psyr_0532 at 602.144 kb on + strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.151 kb on - strand at 602.177 kb on + strand at 602.177 kb on + strand at 602.199 kb on + strand at 602.416 kb on + strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.417 kb on - strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.548 kb on + strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.549 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.579 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.696 kb on - strand, within Psyr_0533 at 602.750 kb on + strand, within Psyr_0533 at 602.751 kb on - strand, within Psyr_0533 at 602.910 kb on - strand at 602.910 kb on - strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.912 kb on + strand at 602.913 kb on - strand at 602.913 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.929 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 602.932 kb on - strand at 602.949 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.970 kb on + strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.971 kb on - strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.978 kb on + strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 602.979 kb on - strand at 603.056 kb on + strand, within Psyr_0534 at 603.056 kb on + strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534 at 603.057 kb on - strand, within Psyr_0534
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 600,824 - Psyr_0531 0.77 -1.3 600,834 + Psyr_0531 0.77 +1.0 601,166 + -1.1 601,167 - -1.0 601,192 + -1.3 601,192 + -1.0 601,193 - -1.0 601,193 - -1.0 601,237 - +1.0 601,441 - Psyr_0532 0.27 -0.6 601,449 + Psyr_0532 0.28 -2.1 601,449 + Psyr_0532 0.28 -0.8 601,449 + Psyr_0532 0.28 -2.1 601,450 - Psyr_0532 0.28 +0.0 601,450 - Psyr_0532 0.28 -1.3 601,450 - Psyr_0532 0.28 +1.6 601,450 - Psyr_0532 0.28 +0.4 601,465 - Psyr_0532 0.30 -0.2 601,465 - Psyr_0532 0.30 +0.4 601,465 - Psyr_0532 0.30 +0.4 601,588 - Psyr_0532 0.42 -2.1 601,669 - Psyr_0532 0.51 -1.8 601,750 - Psyr_0532 0.59 -1.6 601,750 - Psyr_0532 0.59 -1.6 601,809 + Psyr_0532 0.66 +0.0 601,809 + Psyr_0532 0.66 -1.1 601,809 + Psyr_0532 0.66 -1.6 601,809 + Psyr_0532 0.66 -0.6 601,810 - Psyr_0532 0.66 +0.0 601,810 - Psyr_0532 0.66 +3.4 601,810 - Psyr_0532 0.66 -0.6 602,000 + Psyr_0532 0.85 +1.0 602,030 + Psyr_0532 0.89 -0.6 602,144 + -0.4 602,151 - -1.0 602,151 - -1.3 602,151 - -0.4 602,177 + -0.8 602,177 + +0.4 602,199 + -1.3 602,416 + Psyr_0533 0.32 -2.6 602,417 - Psyr_0533 0.32 -1.3 602,417 - Psyr_0533 0.32 -0.1 602,548 + Psyr_0533 0.49 +0.9 602,548 + Psyr_0533 0.49 +0.0 602,548 + Psyr_0533 0.49 -1.0 602,548 + Psyr_0533 0.49 +0.0 602,549 - Psyr_0533 0.49 +1.0 602,549 - Psyr_0533 0.49 +0.6 602,579 - Psyr_0533 0.53 +0.2 602,579 - Psyr_0533 0.53 -0.7 602,696 - Psyr_0533 0.68 -0.3 602,696 - Psyr_0533 0.68 -0.4 602,750 + Psyr_0533 0.75 +0.6 602,751 - Psyr_0533 0.75 -0.6 602,910 - -1.5 602,910 - +0.2 602,912 + -0.7 602,912 + +2.0 602,912 + -1.1 602,912 + +0.7 602,913 - -0.3 602,913 - -1.3 602,929 - -0.7 602,929 - -0.7 602,929 - +2.0 602,931 + -2.3 602,931 + +1.0 602,931 + -2.0 602,932 - -1.7 602,932 - -0.7 602,949 + -0.5 602,970 + -0.6 602,970 + +0.3 602,970 + -0.5 602,970 + -0.3 602,970 + -1.0 602,970 + +0.5 602,971 - -1.1 602,971 - -0.1 602,971 - -1.6 602,971 - -0.8 602,971 - -0.6 602,971 - +1.0 602,971 - +1.6 602,971 - -0.8 602,971 - -0.5 602,971 - +1.8 602,971 - -0.1 602,978 + -2.0 602,978 + +1.1 602,978 + +0.0 602,978 + -0.8 602,978 + -0.7 602,978 + +0.3 602,978 + +1.0 602,979 - +0.2 602,979 - -2.0 602,979 - +0.4 602,979 - +0.6 602,979 - -1.3 602,979 - +0.4 603,056 + Psyr_0534 0.11 +0.1 603,056 + Psyr_0534 0.11 -0.7 603,057 - Psyr_0534 0.11 -0.6 603,057 - Psyr_0534 0.11 +1.3 603,057 - Psyr_0534 0.11 -1.0 603,057 - Psyr_0534 0.11 -2.9
Or see this region's nucleotide sequence