Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0136

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0135 and Psyr_0136 are separated by 53 nucleotidesPsyr_0136 and Psyr_0137 overlap by 1 nucleotidesPsyr_0137 and Psyr_0138 are separated by 210 nucleotides Psyr_0135: Psyr_0135 - outer membrane transport energization protein TonB, at 144,401 to 145,225 _0135 Psyr_0136: Psyr_0136 - outer membrane transport energization protein ExbB, at 145,279 to 145,986 _0136 Psyr_0137: Psyr_0137 - outer membrane transport energization protein ExbD, at 145,986 to 146,387 _0137 Psyr_0138: Psyr_0138 - TonB-dependent receptor:TonB-dependent receptor, at 146,598 to 149,312 _0138 Position (kb) 145 146Strain fitness (log2 ratio) -2 -1 0 1at 144.490 kb on + strand, within Psyr_0135at 144.525 kb on + strand, within Psyr_0135at 144.525 kb on + strand, within Psyr_0135at 144.526 kb on - strand, within Psyr_0135at 144.550 kb on - strand, within Psyr_0135at 144.553 kb on + strand, within Psyr_0135at 144.553 kb on + strand, within Psyr_0135at 144.553 kb on + strand, within Psyr_0135at 144.553 kb on + strand, within Psyr_0135at 144.553 kb on + strand, within Psyr_0135at 144.554 kb on - strand, within Psyr_0135at 144.554 kb on - strand, within Psyr_0135at 144.554 kb on - strand, within Psyr_0135at 144.554 kb on - strand, within Psyr_0135at 144.554 kb on - strand, within Psyr_0135at 144.554 kb on - strand, within Psyr_0135at 144.575 kb on + strand, within Psyr_0135at 144.576 kb on - strand, within Psyr_0135at 144.576 kb on - strand, within Psyr_0135at 144.576 kb on - strand, within Psyr_0135at 144.576 kb on - strand, within Psyr_0135at 144.993 kb on - strand, within Psyr_0135at 145.180 kb on - strandat 145.255 kb on - strandat 145.273 kb on + strandat 145.273 kb on + strandat 145.274 kb on - strandat 145.343 kb on + strandat 145.381 kb on + strand, within Psyr_0136at 145.382 kb on - strand, within Psyr_0136at 145.382 kb on - strand, within Psyr_0136at 145.382 kb on - strand, within Psyr_0136at 145.382 kb on - strand, within Psyr_0136at 145.382 kb on - strand, within Psyr_0136at 145.382 kb on - strand, within Psyr_0136at 145.472 kb on - strand, within Psyr_0136at 145.491 kb on + strand, within Psyr_0136at 145.607 kb on + strand, within Psyr_0136at 145.607 kb on + strand, within Psyr_0136at 145.608 kb on - strand, within Psyr_0136at 145.834 kb on + strand, within Psyr_0136at 145.834 kb on + strand, within Psyr_0136at 145.835 kb on - strand, within Psyr_0136at 145.835 kb on - strand, within Psyr_0136at 145.835 kb on - strand, within Psyr_0136at 145.984 kb on + strandat 145.984 kb on + strandat 145.985 kb on - strandat 146.199 kb on + strand, within Psyr_0137at 146.199 kb on + strand, within Psyr_0137at 146.366 kb on - strandat 146.587 kb on + strandat 146.788 kb on + strandat 146.788 kb on + strandat 146.788 kb on + strandat 146.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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144,490 + Psyr_0135 0.11 -0.0
144,525 + Psyr_0135 0.15 +1.1
144,525 + Psyr_0135 0.15 +0.7
144,526 - Psyr_0135 0.15 +0.1
144,550 - Psyr_0135 0.18 -0.3
144,553 + Psyr_0135 0.18 -0.1
144,553 + Psyr_0135 0.18 +1.4
144,553 + Psyr_0135 0.18 -2.4
144,553 + Psyr_0135 0.18 +0.0
144,553 + Psyr_0135 0.18 +0.9
144,554 - Psyr_0135 0.19 +0.3
144,554 - Psyr_0135 0.19 -0.0
144,554 - Psyr_0135 0.19 -0.3
144,554 - Psyr_0135 0.19 +1.1
144,554 - Psyr_0135 0.19 -0.4
144,554 - Psyr_0135 0.19 -0.5
144,575 + Psyr_0135 0.21 +0.8
144,576 - Psyr_0135 0.21 -0.0
144,576 - Psyr_0135 0.21 +0.7
144,576 - Psyr_0135 0.21 +0.6
144,576 - Psyr_0135 0.21 -0.1
144,993 - Psyr_0135 0.72 -0.2
145,180 - -0.4
145,255 - -0.9
145,273 + +0.6
145,273 + +0.5
145,274 - +0.1
145,343 + +1.7
145,381 + Psyr_0136 0.14 -0.4
145,382 - Psyr_0136 0.15 -0.2
145,382 - Psyr_0136 0.15 +1.1
145,382 - Psyr_0136 0.15 +1.1
145,382 - Psyr_0136 0.15 -0.1
145,382 - Psyr_0136 0.15 -1.1
145,382 - Psyr_0136 0.15 +0.9
145,472 - Psyr_0136 0.27 +0.7
145,491 + Psyr_0136 0.30 +0.7
145,607 + Psyr_0136 0.46 +0.1
145,607 + Psyr_0136 0.46 +0.2
145,608 - Psyr_0136 0.46 +0.7
145,834 + Psyr_0136 0.78 +0.6
145,834 + Psyr_0136 0.78 +0.3
145,835 - Psyr_0136 0.79 +0.7
145,835 - Psyr_0136 0.79 +1.0
145,835 - Psyr_0136 0.79 +0.6
145,984 + -0.2
145,984 + -0.1
145,985 - -1.3
146,199 + Psyr_0137 0.53 +0.9
146,199 + Psyr_0137 0.53 +0.1
146,366 - -2.0
146,587 + +1.5
146,788 + +0.0
146,788 + +0.1
146,788 + -0.6
146,788 + +0.1

Or see this region's nucleotide sequence