Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_731 and Pf6N2E2_732 overlap by 8 nucleotides Pf6N2E2_732 and Pf6N2E2_733 are separated by 10 nucleotides Pf6N2E2_733 and Pf6N2E2_734 are separated by 25 nucleotides
Pf6N2E2_731 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 839,552 to 840,307
_731
Pf6N2E2_732 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 840,300 to 840,980
_732
Pf6N2E2_733 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 840,991 to 841,959
_733
Pf6N2E2_734 - Molybdenum cofactor biosynthesis protein MoaA, at 841,985 to 842,977
_734
Position (kb) 840
841
842 Strain fitness (log2 ratio) -1
0
1
2 at 840.298 kb on + strand at 840.298 kb on + strand at 840.305 kb on + strand at 840.305 kb on + strand at 840.306 kb on - strand at 840.306 kb on - strand at 840.396 kb on + strand, within Pf6N2E2_732 at 840.397 kb on - strand, within Pf6N2E2_732 at 840.397 kb on - strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.528 kb on + strand, within Pf6N2E2_732 at 840.529 kb on - strand, within Pf6N2E2_732 at 840.529 kb on - strand, within Pf6N2E2_732 at 840.529 kb on - strand, within Pf6N2E2_732 at 840.529 kb on - strand, within Pf6N2E2_732 at 840.529 kb on - strand, within Pf6N2E2_732 at 840.529 kb on - strand, within Pf6N2E2_732 at 840.740 kb on + strand, within Pf6N2E2_732 at 840.852 kb on + strand, within Pf6N2E2_732 at 840.852 kb on + strand, within Pf6N2E2_732 at 840.853 kb on - strand, within Pf6N2E2_732 at 840.940 kb on - strand at 840.940 kb on - strand at 841.246 kb on + strand, within Pf6N2E2_733 at 841.247 kb on - strand, within Pf6N2E2_733 at 841.454 kb on - strand, within Pf6N2E2_733 at 841.454 kb on - strand, within Pf6N2E2_733 at 841.454 kb on - strand, within Pf6N2E2_733 at 841.882 kb on + strand at 842.073 kb on - strand at 842.517 kb on - strand, within Pf6N2E2_734 at 842.684 kb on + strand, within Pf6N2E2_734 at 842.684 kb on + strand, within Pf6N2E2_734 at 842.684 kb on + strand, within Pf6N2E2_734 at 842.685 kb on - strand, within Pf6N2E2_734
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 840,298 + +1.1 840,298 + +0.6 840,305 + +0.0 840,305 + +1.5 840,306 - +1.1 840,306 - -0.7 840,396 + Pf6N2E2_732 0.14 +0.5 840,397 - Pf6N2E2_732 0.14 -0.2 840,397 - Pf6N2E2_732 0.14 -0.1 840,528 + Pf6N2E2_732 0.33 +1.0 840,528 + Pf6N2E2_732 0.33 +1.0 840,528 + Pf6N2E2_732 0.33 -0.1 840,528 + Pf6N2E2_732 0.33 +1.9 840,528 + Pf6N2E2_732 0.33 -0.1 840,528 + Pf6N2E2_732 0.33 +0.7 840,528 + Pf6N2E2_732 0.33 +0.4 840,528 + Pf6N2E2_732 0.33 +0.4 840,529 - Pf6N2E2_732 0.34 +1.5 840,529 - Pf6N2E2_732 0.34 +1.4 840,529 - Pf6N2E2_732 0.34 +0.4 840,529 - Pf6N2E2_732 0.34 +0.2 840,529 - Pf6N2E2_732 0.34 +1.7 840,529 - Pf6N2E2_732 0.34 -0.0 840,740 + Pf6N2E2_732 0.65 -0.4 840,852 + Pf6N2E2_732 0.81 +0.1 840,852 + Pf6N2E2_732 0.81 -1.4 840,853 - Pf6N2E2_732 0.81 +0.4 840,940 - -0.3 840,940 - -0.2 841,246 + Pf6N2E2_733 0.26 -1.7 841,247 - Pf6N2E2_733 0.26 -1.3 841,454 - Pf6N2E2_733 0.48 +0.0 841,454 - Pf6N2E2_733 0.48 -0.7 841,454 - Pf6N2E2_733 0.48 +0.1 841,882 + -0.4 842,073 - +1.0 842,517 - Pf6N2E2_734 0.54 +1.1 842,684 + Pf6N2E2_734 0.70 +0.2 842,684 + Pf6N2E2_734 0.70 -1.5 842,684 + Pf6N2E2_734 0.70 +0.3 842,685 - Pf6N2E2_734 0.70 +0.4
Or see this region's nucleotide sequence