Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_726 and Pf6N2E2_727 are separated by 308 nucleotides Pf6N2E2_727 and Pf6N2E2_728 overlap by 23 nucleotides
Pf6N2E2_726 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 829,387 to 831,186
_726
Pf6N2E2_727 - Nitrate/nitrite transporter, at 831,495 to 832,796
_727
Pf6N2E2_728 - Nitrate/nitrite transporter, at 832,774 to 834,171
_728
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 830.667 kb on - strand, within Pf6N2E2_726 at 830.882 kb on + strand, within Pf6N2E2_726 at 831.020 kb on + strand at 831.020 kb on + strand at 831.021 kb on - strand at 831.021 kb on - strand at 831.021 kb on - strand at 831.251 kb on - strand at 831.251 kb on - strand at 831.272 kb on + strand at 831.272 kb on + strand at 831.272 kb on + strand at 831.273 kb on - strand at 831.334 kb on - strand at 831.354 kb on - strand at 831.383 kb on + strand at 831.384 kb on - strand at 831.398 kb on + strand at 831.459 kb on + strand at 831.459 kb on + strand at 831.459 kb on + strand at 831.459 kb on + strand at 831.460 kb on - strand at 831.523 kb on + strand at 831.523 kb on + strand at 831.536 kb on + strand at 831.536 kb on + strand at 831.759 kb on + strand, within Pf6N2E2_727 at 831.760 kb on - strand, within Pf6N2E2_727 at 831.852 kb on + strand, within Pf6N2E2_727 at 831.852 kb on + strand, within Pf6N2E2_727 at 831.852 kb on + strand, within Pf6N2E2_727 at 832.134 kb on + strand, within Pf6N2E2_727 at 832.135 kb on - strand, within Pf6N2E2_727 at 832.135 kb on - strand, within Pf6N2E2_727 at 832.137 kb on + strand, within Pf6N2E2_727 at 832.159 kb on - strand, within Pf6N2E2_727 at 832.159 kb on - strand, within Pf6N2E2_727 at 832.188 kb on + strand, within Pf6N2E2_727 at 832.188 kb on + strand, within Pf6N2E2_727 at 832.189 kb on - strand, within Pf6N2E2_727 at 832.189 kb on - strand, within Pf6N2E2_727 at 832.189 kb on - strand, within Pf6N2E2_727 at 832.189 kb on - strand, within Pf6N2E2_727 at 832.191 kb on + strand, within Pf6N2E2_727 at 832.192 kb on - strand, within Pf6N2E2_727 at 832.192 kb on - strand, within Pf6N2E2_727 at 832.192 kb on - strand, within Pf6N2E2_727 at 832.192 kb on - strand, within Pf6N2E2_727 at 832.192 kb on - strand, within Pf6N2E2_727 at 832.192 kb on - strand, within Pf6N2E2_727 at 832.503 kb on + strand, within Pf6N2E2_727 at 832.503 kb on + strand, within Pf6N2E2_727 at 832.504 kb on - strand, within Pf6N2E2_727 at 832.504 kb on - strand, within Pf6N2E2_727 at 832.650 kb on + strand, within Pf6N2E2_727 at 832.650 kb on + strand, within Pf6N2E2_727 at 832.651 kb on - strand, within Pf6N2E2_727 at 832.651 kb on - strand, within Pf6N2E2_727 at 832.651 kb on - strand, within Pf6N2E2_727 at 832.683 kb on + strand at 832.683 kb on + strand at 832.683 kb on + strand at 832.683 kb on + strand at 832.683 kb on + strand at 832.684 kb on - strand at 832.684 kb on - strand at 832.684 kb on - strand at 833.042 kb on - strand, within Pf6N2E2_728 at 833.239 kb on + strand, within Pf6N2E2_728 at 833.375 kb on + strand, within Pf6N2E2_728
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 830,667 - Pf6N2E2_726 0.71 +0.2 830,882 + Pf6N2E2_726 0.83 +0.1 831,020 + -0.4 831,020 + -0.2 831,021 - +1.0 831,021 - -1.4 831,021 - -2.1 831,251 - -0.1 831,251 - -0.3 831,272 + -0.2 831,272 + +0.4 831,272 + +0.3 831,273 - -0.0 831,334 - +0.9 831,354 - +1.4 831,383 + -1.6 831,384 - -0.5 831,398 + -0.7 831,459 + +0.4 831,459 + -0.3 831,459 + +0.5 831,459 + +1.0 831,460 - +0.6 831,523 + +1.4 831,523 + +0.4 831,536 + +0.9 831,536 + -0.4 831,759 + Pf6N2E2_727 0.20 -2.1 831,760 - Pf6N2E2_727 0.20 +1.9 831,852 + Pf6N2E2_727 0.27 +1.1 831,852 + Pf6N2E2_727 0.27 -0.5 831,852 + Pf6N2E2_727 0.27 -0.4 832,134 + Pf6N2E2_727 0.49 +0.5 832,135 - Pf6N2E2_727 0.49 -0.8 832,135 - Pf6N2E2_727 0.49 +0.4 832,137 + Pf6N2E2_727 0.49 -0.4 832,159 - Pf6N2E2_727 0.51 -0.6 832,159 - Pf6N2E2_727 0.51 -0.1 832,188 + Pf6N2E2_727 0.53 -0.4 832,188 + Pf6N2E2_727 0.53 +1.0 832,189 - Pf6N2E2_727 0.53 +0.3 832,189 - Pf6N2E2_727 0.53 +1.3 832,189 - Pf6N2E2_727 0.53 -0.0 832,189 - Pf6N2E2_727 0.53 -0.1 832,191 + Pf6N2E2_727 0.53 +0.6 832,192 - Pf6N2E2_727 0.54 +1.1 832,192 - Pf6N2E2_727 0.54 +0.5 832,192 - Pf6N2E2_727 0.54 +1.0 832,192 - Pf6N2E2_727 0.54 -0.4 832,192 - Pf6N2E2_727 0.54 -0.4 832,192 - Pf6N2E2_727 0.54 +1.1 832,503 + Pf6N2E2_727 0.77 -0.7 832,503 + Pf6N2E2_727 0.77 +0.8 832,504 - Pf6N2E2_727 0.77 +0.6 832,504 - Pf6N2E2_727 0.77 +1.1 832,650 + Pf6N2E2_727 0.89 -0.7 832,650 + Pf6N2E2_727 0.89 +1.2 832,651 - Pf6N2E2_727 0.89 -1.1 832,651 - Pf6N2E2_727 0.89 -0.6 832,651 - Pf6N2E2_727 0.89 +0.5 832,683 + +0.0 832,683 + +0.3 832,683 + +0.7 832,683 + +1.1 832,683 + +0.9 832,684 - +0.4 832,684 - +0.4 832,684 - +0.5 833,042 - Pf6N2E2_728 0.19 +0.2 833,239 + Pf6N2E2_728 0.33 +1.6 833,375 + Pf6N2E2_728 0.43 +0.5
Or see this region's nucleotide sequence