Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_387 and Pf6N2E2_388 are separated by 56 nucleotides Pf6N2E2_388 and Pf6N2E2_389 are separated by 216 nucleotides
Pf6N2E2_387 - Candidate type III effector Hop protein, at 453,989 to 455,380
_387
Pf6N2E2_388 - Transporter, MFS superfamily, at 455,437 to 456,780
_388
Pf6N2E2_389 - Choline dehydrogenase (EC 1.1.99.1), at 456,997 to 458,562
_389
Position (kb) 455
456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.639 kb on + strand, within Pf6N2E2_387 at 454.640 kb on - strand, within Pf6N2E2_387 at 454.651 kb on + strand, within Pf6N2E2_387 at 454.651 kb on + strand, within Pf6N2E2_387 at 454.651 kb on + strand, within Pf6N2E2_387 at 454.652 kb on - strand, within Pf6N2E2_387 at 454.652 kb on - strand, within Pf6N2E2_387 at 454.652 kb on - strand, within Pf6N2E2_387 at 454.687 kb on + strand, within Pf6N2E2_387 at 454.740 kb on + strand, within Pf6N2E2_387 at 454.770 kb on + strand, within Pf6N2E2_387 at 454.771 kb on - strand, within Pf6N2E2_387 at 454.933 kb on + strand, within Pf6N2E2_387 at 454.934 kb on - strand, within Pf6N2E2_387 at 455.157 kb on - strand, within Pf6N2E2_387 at 455.177 kb on - strand, within Pf6N2E2_387 at 455.177 kb on - strand, within Pf6N2E2_387 at 455.177 kb on - strand, within Pf6N2E2_387 at 455.179 kb on - strand, within Pf6N2E2_387 at 455.192 kb on - strand, within Pf6N2E2_387 at 455.295 kb on - strand at 455.295 kb on - strand at 455.348 kb on + strand at 455.349 kb on - strand at 455.349 kb on - strand at 455.355 kb on + strand at 455.356 kb on - strand at 455.356 kb on - strand at 455.415 kb on + strand at 455.416 kb on - strand at 455.421 kb on - strand at 455.454 kb on - strand at 455.554 kb on + strand at 455.554 kb on + strand at 455.554 kb on + strand at 455.555 kb on - strand at 455.555 kb on - strand at 455.564 kb on - strand at 455.570 kb on - strand at 455.570 kb on - strand at 455.794 kb on - strand, within Pf6N2E2_388 at 455.875 kb on + strand, within Pf6N2E2_388 at 455.897 kb on + strand, within Pf6N2E2_388 at 455.897 kb on + strand, within Pf6N2E2_388 at 455.897 kb on + strand, within Pf6N2E2_388 at 455.898 kb on - strand, within Pf6N2E2_388 at 455.898 kb on - strand, within Pf6N2E2_388 at 455.898 kb on - strand, within Pf6N2E2_388 at 455.898 kb on - strand, within Pf6N2E2_388 at 455.949 kb on + strand, within Pf6N2E2_388 at 456.008 kb on + strand, within Pf6N2E2_388 at 456.008 kb on + strand, within Pf6N2E2_388 at 456.009 kb on - strand, within Pf6N2E2_388 at 456.028 kb on + strand, within Pf6N2E2_388 at 456.031 kb on - strand, within Pf6N2E2_388 at 456.149 kb on + strand, within Pf6N2E2_388 at 456.167 kb on + strand, within Pf6N2E2_388 at 456.167 kb on + strand, within Pf6N2E2_388 at 456.202 kb on - strand, within Pf6N2E2_388 at 456.209 kb on + strand, within Pf6N2E2_388 at 456.209 kb on + strand, within Pf6N2E2_388 at 456.254 kb on - strand, within Pf6N2E2_388 at 456.280 kb on + strand, within Pf6N2E2_388 at 456.280 kb on + strand, within Pf6N2E2_388 at 456.280 kb on + strand, within Pf6N2E2_388 at 456.530 kb on + strand, within Pf6N2E2_388 at 456.531 kb on - strand, within Pf6N2E2_388 at 456.531 kb on - strand, within Pf6N2E2_388 at 456.532 kb on + strand, within Pf6N2E2_388 at 456.532 kb on + strand, within Pf6N2E2_388 at 456.532 kb on + strand, within Pf6N2E2_388 at 456.532 kb on + strand, within Pf6N2E2_388 at 456.533 kb on - strand, within Pf6N2E2_388 at 456.533 kb on - strand, within Pf6N2E2_388 at 456.533 kb on - strand, within Pf6N2E2_388 at 456.655 kb on + strand at 456.656 kb on - strand at 456.697 kb on + strand at 456.698 kb on - strand at 456.736 kb on + strand at 456.736 kb on + strand at 456.765 kb on + strand at 456.766 kb on - strand at 456.778 kb on + strand at 456.778 kb on + strand at 456.778 kb on + strand at 456.779 kb on - strand at 456.875 kb on + strand at 456.875 kb on + strand at 456.875 kb on + strand at 456.875 kb on + strand at 456.875 kb on + strand at 456.881 kb on + strand at 456.881 kb on + strand at 456.938 kb on - strand at 456.938 kb on - strand at 456.966 kb on - strand at 456.966 kb on - strand at 456.998 kb on + strand at 457.143 kb on - strand at 457.143 kb on - strand at 457.214 kb on + strand, within Pf6N2E2_389 at 457.583 kb on + strand, within Pf6N2E2_389 at 457.583 kb on + strand, within Pf6N2E2_389 at 457.583 kb on + strand, within Pf6N2E2_389 at 457.584 kb on - strand, within Pf6N2E2_389 at 457.584 kb on - strand, within Pf6N2E2_389 at 457.632 kb on - strand, within Pf6N2E2_389 at 457.641 kb on + strand, within Pf6N2E2_389
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 454,639 + Pf6N2E2_387 0.47 +0.2 454,640 - Pf6N2E2_387 0.47 +0.1 454,651 + Pf6N2E2_387 0.48 +0.3 454,651 + Pf6N2E2_387 0.48 -1.2 454,651 + Pf6N2E2_387 0.48 +0.1 454,652 - Pf6N2E2_387 0.48 +0.0 454,652 - Pf6N2E2_387 0.48 -0.6 454,652 - Pf6N2E2_387 0.48 +0.8 454,687 + Pf6N2E2_387 0.50 +0.9 454,740 + Pf6N2E2_387 0.54 -0.9 454,770 + Pf6N2E2_387 0.56 +0.3 454,771 - Pf6N2E2_387 0.56 +1.3 454,933 + Pf6N2E2_387 0.68 -0.3 454,934 - Pf6N2E2_387 0.68 -1.5 455,157 - Pf6N2E2_387 0.84 +0.7 455,177 - Pf6N2E2_387 0.85 +0.2 455,177 - Pf6N2E2_387 0.85 -0.0 455,177 - Pf6N2E2_387 0.85 -0.3 455,179 - Pf6N2E2_387 0.85 +0.4 455,192 - Pf6N2E2_387 0.86 -0.0 455,295 - +0.8 455,295 - +0.7 455,348 + -1.3 455,349 - -0.3 455,349 - +0.5 455,355 + +1.3 455,356 - -1.3 455,356 - +1.0 455,415 + -2.1 455,416 - -0.9 455,421 - -0.3 455,454 - +0.6 455,554 + +0.5 455,554 + -0.1 455,554 + -0.5 455,555 - +0.8 455,555 - +0.5 455,564 - -0.7 455,570 - +0.9 455,570 - -1.6 455,794 - Pf6N2E2_388 0.27 -0.1 455,875 + Pf6N2E2_388 0.33 +0.0 455,897 + Pf6N2E2_388 0.34 -0.5 455,897 + Pf6N2E2_388 0.34 -1.4 455,897 + Pf6N2E2_388 0.34 +0.5 455,898 - Pf6N2E2_388 0.34 -0.4 455,898 - Pf6N2E2_388 0.34 -0.4 455,898 - Pf6N2E2_388 0.34 -1.0 455,898 - Pf6N2E2_388 0.34 -0.9 455,949 + Pf6N2E2_388 0.38 -0.7 456,008 + Pf6N2E2_388 0.42 +0.6 456,008 + Pf6N2E2_388 0.42 -0.7 456,009 - Pf6N2E2_388 0.43 -0.7 456,028 + Pf6N2E2_388 0.44 -0.7 456,031 - Pf6N2E2_388 0.44 +0.8 456,149 + Pf6N2E2_388 0.53 -0.4 456,167 + Pf6N2E2_388 0.54 -1.3 456,167 + Pf6N2E2_388 0.54 +0.3 456,202 - Pf6N2E2_388 0.57 +1.7 456,209 + Pf6N2E2_388 0.57 -0.1 456,209 + Pf6N2E2_388 0.57 +0.6 456,254 - Pf6N2E2_388 0.61 +0.8 456,280 + Pf6N2E2_388 0.63 -0.7 456,280 + Pf6N2E2_388 0.63 +0.6 456,280 + Pf6N2E2_388 0.63 -0.7 456,530 + Pf6N2E2_388 0.81 -0.4 456,531 - Pf6N2E2_388 0.81 -0.2 456,531 - Pf6N2E2_388 0.81 -0.1 456,532 + Pf6N2E2_388 0.81 +1.1 456,532 + Pf6N2E2_388 0.81 +0.2 456,532 + Pf6N2E2_388 0.81 -0.6 456,532 + Pf6N2E2_388 0.81 +0.7 456,533 - Pf6N2E2_388 0.82 -0.8 456,533 - Pf6N2E2_388 0.82 -1.2 456,533 - Pf6N2E2_388 0.82 -1.5 456,655 + -0.8 456,656 - -0.6 456,697 + +0.7 456,698 - +0.4 456,736 + +0.3 456,736 + -1.1 456,765 + +0.8 456,766 - +0.1 456,778 + -1.3 456,778 + +0.1 456,778 + -0.4 456,779 - +0.3 456,875 + -0.7 456,875 + -0.5 456,875 + +0.0 456,875 + +2.3 456,875 + +0.4 456,881 + +0.0 456,881 + -1.4 456,938 - -0.7 456,938 - -0.2 456,966 - +1.6 456,966 - -0.2 456,998 + -0.2 457,143 - +0.6 457,143 - -0.3 457,214 + Pf6N2E2_389 0.14 -0.0 457,583 + Pf6N2E2_389 0.37 -0.6 457,583 + Pf6N2E2_389 0.37 +1.1 457,583 + Pf6N2E2_389 0.37 +0.2 457,584 - Pf6N2E2_389 0.37 +0.0 457,584 - Pf6N2E2_389 0.37 -0.2 457,632 - Pf6N2E2_389 0.41 -0.0 457,641 + Pf6N2E2_389 0.41 -0.2
Or see this region's nucleotide sequence