Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3064

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3063 and Pf6N2E2_3064 overlap by 4 nucleotidesPf6N2E2_3064 and Pf6N2E2_3065 overlap by 1 nucleotidesPf6N2E2_3065 and Pf6N2E2_3066 are separated by 13 nucleotides Pf6N2E2_3063 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,550,162 to 3,551,352 _3063 Pf6N2E2_3064 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,551,349 to 3,552,155 _3064 Pf6N2E2_3065 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,552,155 to 3,552,910 _3065 Pf6N2E2_3066 - Ribosome recycling factor, at 3,552,924 to 3,553,481 _3066 Position (kb) 3551 3552 3553Strain fitness (log2 ratio) -1 0 1at 3552.926 kb on - strandat 3552.926 kb on - strandat 3552.928 kb on - strandat 3552.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,552,926 - +1.0
3,552,926 - +0.2
3,552,928 - +0.4
3,552,928 - +0.9

Or see this region's nucleotide sequence