Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5137 and Pf1N1B4_5138 are separated by 237 nucleotides Pf1N1B4_5138 and Pf1N1B4_5139 are separated by 113 nucleotides
Pf1N1B4_5137 - Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-), at 5,716,073 to 5,717,170
_5137
Pf1N1B4_5138 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 5,717,408 to 5,718,499
_5138
Pf1N1B4_5139 - Gamma-aminobutyrate permease, at 5,718,613 to 5,720,118
_5139
Position (kb) 5717
5718
5719 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5716.419 kb on + strand, within Pf1N1B4_5137 at 5716.851 kb on + strand at 5716.942 kb on - strand, within Pf1N1B4_5137 at 5717.005 kb on + strand, within Pf1N1B4_5137 at 5717.006 kb on - strand, within Pf1N1B4_5137 at 5717.006 kb on - strand, within Pf1N1B4_5137 at 5717.006 kb on - strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.019 kb on + strand, within Pf1N1B4_5137 at 5717.020 kb on - strand at 5717.020 kb on - strand at 5717.020 kb on - strand, within Pf1N1B4_5137 at 5717.020 kb on - strand, within Pf1N1B4_5137 at 5717.020 kb on - strand, within Pf1N1B4_5137 at 5717.151 kb on + strand at 5717.151 kb on + strand at 5717.151 kb on + strand at 5717.152 kb on - strand at 5717.152 kb on - strand at 5717.154 kb on + strand at 5717.155 kb on - strand at 5717.338 kb on + strand at 5717.339 kb on - strand at 5717.633 kb on + strand, within Pf1N1B4_5138 at 5717.694 kb on + strand, within Pf1N1B4_5138 at 5717.721 kb on + strand, within Pf1N1B4_5138 at 5717.721 kb on + strand, within Pf1N1B4_5138 at 5717.767 kb on - strand at 5717.911 kb on - strand, within Pf1N1B4_5138 at 5718.492 kb on + strand at 5718.492 kb on + strand at 5718.492 kb on + strand at 5718.598 kb on - strand at 5718.607 kb on + strand at 5718.607 kb on + strand at 5718.608 kb on - strand at 5718.790 kb on - strand, within Pf1N1B4_5139 at 5718.790 kb on - strand, within Pf1N1B4_5139 at 5718.950 kb on + strand, within Pf1N1B4_5139 at 5719.089 kb on + strand, within Pf1N1B4_5139 at 5719.091 kb on + strand, within Pf1N1B4_5139 at 5719.091 kb on + strand at 5719.092 kb on - strand, within Pf1N1B4_5139 at 5719.141 kb on + strand, within Pf1N1B4_5139 at 5719.148 kb on - strand, within Pf1N1B4_5139
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,716,419 + Pf1N1B4_5137 0.32 -1.3 5,716,851 + +1.0 5,716,942 - Pf1N1B4_5137 0.79 -2.4 5,717,005 + Pf1N1B4_5137 0.85 +0.5 5,717,006 - Pf1N1B4_5137 0.85 -1.1 5,717,006 - Pf1N1B4_5137 0.85 -1.4 5,717,006 - Pf1N1B4_5137 0.85 -2.0 5,717,019 + Pf1N1B4_5137 0.86 -1.0 5,717,019 + Pf1N1B4_5137 0.86 -1.3 5,717,019 + Pf1N1B4_5137 0.86 -1.5 5,717,019 + Pf1N1B4_5137 0.86 +0.5 5,717,019 + Pf1N1B4_5137 0.86 +1.5 5,717,019 + Pf1N1B4_5137 0.86 -1.2 5,717,019 + Pf1N1B4_5137 0.86 -2.0 5,717,020 - +1.0 5,717,020 - -0.0 5,717,020 - Pf1N1B4_5137 0.86 -1.8 5,717,020 - Pf1N1B4_5137 0.86 -1.0 5,717,020 - Pf1N1B4_5137 0.86 -0.0 5,717,151 + -0.4 5,717,151 + -0.0 5,717,151 + +0.4 5,717,152 - -0.6 5,717,152 - +0.2 5,717,154 + +0.7 5,717,155 - -0.8 5,717,338 + -1.0 5,717,339 - +0.4 5,717,633 + Pf1N1B4_5138 0.21 -0.9 5,717,694 + Pf1N1B4_5138 0.26 -1.2 5,717,721 + Pf1N1B4_5138 0.29 +0.1 5,717,721 + Pf1N1B4_5138 0.29 -2.1 5,717,767 - -1.6 5,717,911 - Pf1N1B4_5138 0.46 -0.6 5,718,492 + +2.0 5,718,492 + -1.6 5,718,492 + +0.4 5,718,598 - -1.4 5,718,607 + +0.6 5,718,607 + -1.3 5,718,608 - +2.0 5,718,790 - Pf1N1B4_5139 0.12 -0.2 5,718,790 - Pf1N1B4_5139 0.12 -0.0 5,718,950 + Pf1N1B4_5139 0.22 -0.0 5,719,089 + Pf1N1B4_5139 0.32 +1.5 5,719,091 + Pf1N1B4_5139 0.32 +0.5 5,719,091 + -1.0 5,719,092 - Pf1N1B4_5139 0.32 -0.9 5,719,141 + Pf1N1B4_5139 0.35 +0.6 5,719,148 - Pf1N1B4_5139 0.36 +1.0
Or see this region's nucleotide sequence