Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5058 and Pf1N1B4_5059 are separated by 106 nucleotides Pf1N1B4_5059 and Pf1N1B4_5060 are separated by 182 nucleotides
Pf1N1B4_5058 - D-galactarate permease, at 5,602,346 to 5,603,743
_5058
Pf1N1B4_5059 - Transcriptional regulator, LysR family, at 5,603,850 to 5,604,752
_5059
Pf1N1B4_5060 - Ferrichrome-iron receptor, at 5,604,935 to 5,607,097
_5060
Position (kb) 5603
5604
5605 Strain fitness (log2 ratio) -2
-1
0
1 at 5602.947 kb on + strand, within Pf1N1B4_5058 at 5602.948 kb on - strand at 5603.340 kb on + strand at 5603.341 kb on - strand, within Pf1N1B4_5058 at 5603.343 kb on + strand, within Pf1N1B4_5058 at 5603.344 kb on - strand, within Pf1N1B4_5058 at 5603.400 kb on + strand, within Pf1N1B4_5058 at 5603.400 kb on + strand, within Pf1N1B4_5058 at 5603.506 kb on + strand, within Pf1N1B4_5058 at 5603.507 kb on - strand, within Pf1N1B4_5058 at 5603.637 kb on + strand at 5603.637 kb on + strand at 5603.638 kb on - strand at 5603.731 kb on + strand at 5604.432 kb on + strand, within Pf1N1B4_5059 at 5604.433 kb on - strand, within Pf1N1B4_5059 at 5604.507 kb on + strand, within Pf1N1B4_5059 at 5604.825 kb on + strand at 5604.825 kb on + strand at 5604.825 kb on + strand at 5604.826 kb on - strand at 5604.907 kb on + strand at 5604.908 kb on - strand at 5605.060 kb on + strand at 5605.194 kb on + strand, within Pf1N1B4_5060 at 5605.227 kb on - strand, within Pf1N1B4_5060 at 5605.293 kb on - strand, within Pf1N1B4_5060 at 5605.293 kb on - strand, within Pf1N1B4_5060 at 5605.421 kb on + strand at 5605.421 kb on + strand, within Pf1N1B4_5060 at 5605.422 kb on - strand, within Pf1N1B4_5060 at 5605.574 kb on + strand, within Pf1N1B4_5060 at 5605.574 kb on + strand at 5605.575 kb on - strand, within Pf1N1B4_5060
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 5,602,947 + Pf1N1B4_5058 0.43 -1.8 5,602,948 - -0.0 5,603,340 + +0.4 5,603,341 - Pf1N1B4_5058 0.71 -0.8 5,603,343 + Pf1N1B4_5058 0.71 -0.0 5,603,344 - Pf1N1B4_5058 0.71 +0.2 5,603,400 + Pf1N1B4_5058 0.75 +0.1 5,603,400 + Pf1N1B4_5058 0.75 +0.4 5,603,506 + Pf1N1B4_5058 0.83 -1.4 5,603,507 - Pf1N1B4_5058 0.83 -2.2 5,603,637 + +1.0 5,603,637 + -0.8 5,603,638 - -0.6 5,603,731 + +0.5 5,604,432 + Pf1N1B4_5059 0.64 -0.9 5,604,433 - Pf1N1B4_5059 0.65 -1.5 5,604,507 + Pf1N1B4_5059 0.73 -0.0 5,604,825 + +1.3 5,604,825 + -0.0 5,604,825 + -1.4 5,604,826 - +1.0 5,604,907 + -0.9 5,604,908 - -1.4 5,605,060 + -0.3 5,605,194 + Pf1N1B4_5060 0.12 -1.4 5,605,227 - Pf1N1B4_5060 0.13 +0.0 5,605,293 - Pf1N1B4_5060 0.17 -2.5 5,605,293 - Pf1N1B4_5060 0.17 +0.5 5,605,421 + +0.5 5,605,421 + Pf1N1B4_5060 0.22 +0.2 5,605,422 - Pf1N1B4_5060 0.23 -0.4 5,605,574 + Pf1N1B4_5060 0.30 -1.0 5,605,574 + +1.0 5,605,575 - Pf1N1B4_5060 0.30 +0.2
Or see this region's nucleotide sequence