Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09660

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS09655 and HSERO_RS09660 are separated by 193 nucleotidesHSERO_RS09660 and HSERO_RS09665 overlap by 4 nucleotides HSERO_RS09655: HSERO_RS09655 - signal peptidase, at 2,192,001 to 2,192,915 _RS09655 HSERO_RS09660: HSERO_RS09660 - ribonuclease III, at 2,193,109 to 2,194,068 _RS09660 HSERO_RS09665: HSERO_RS09665 - GTPase Era, at 2,194,065 to 2,194,994 _RS09665 Position (kb) 2193 2194 2195Strain fitness (log2 ratio) -2 -1 0 1at 2193.055 kb on - strandat 2193.551 kb on + strand, within HSERO_RS09660at 2193.800 kb on + strand, within HSERO_RS09660at 2193.968 kb on - strand, within HSERO_RS09660at 2194.053 kb on + strandat 2194.946 kb on + strandat 2195.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,193,055 - -1.8
2,193,551 + HSERO_RS09660 0.46 -0.5
2,193,800 + HSERO_RS09660 0.72 -1.3
2,193,968 - HSERO_RS09660 0.89 -0.1
2,194,053 + -1.9
2,194,946 + -0.9
2,195,054 - +1.4

Or see this region's nucleotide sequence