Experiment: Pectic galactan from potato 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16720 and HMPREF1058_RS16715 are separated by 89 nucleotides HMPREF1058_RS16715 and HMPREF1058_RS16710 are separated by 205 nucleotides HMPREF1058_RS16710 and HMPREF1058_RS16705 are separated by 356 nucleotides HMPREF1058_RS16705 and HMPREF1058_RS16700 are separated by 4 nucleotides
HMPREF1058_RS16720: HMPREF1058_RS16720 - nitroreductase family protein, at 610,782 to 611,411
_RS16720
HMPREF1058_RS16715: HMPREF1058_RS16715 - hypothetical protein, at 611,501 to 611,749
_RS16715
HMPREF1058_RS16710: HMPREF1058_RS16710 - hypothetical protein, at 611,955 to 612,278
_RS16710
HMPREF1058_RS16705: HMPREF1058_RS16705 - xanthine phosphoribosyltransferase, at 612,635 to 613,201
_RS16705
HMPREF1058_RS16700: HMPREF1058_RS16700 - purine permease, at 613,206 to 614,537
_RS16700
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.975 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.041 kb on + strand, within HMPREF1058_RS16720 at 611.085 kb on + strand, within HMPREF1058_RS16720 at 611.285 kb on - strand, within HMPREF1058_RS16720 at 611.390 kb on + strand at 611.453 kb on + strand at 611.455 kb on + strand at 611.543 kb on + strand, within HMPREF1058_RS16715 at 611.652 kb on - strand, within HMPREF1058_RS16715 at 611.735 kb on + strand at 611.749 kb on + strand at 611.766 kb on + strand at 611.796 kb on - strand at 611.803 kb on + strand at 611.803 kb on + strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.804 kb on - strand at 611.805 kb on + strand at 611.806 kb on - strand at 611.844 kb on + strand at 611.845 kb on - strand at 611.847 kb on - strand at 611.916 kb on + strand at 611.918 kb on + strand at 611.919 kb on - strand at 611.940 kb on - strand at 611.942 kb on - strand at 611.944 kb on + strand at 611.994 kb on + strand, within HMPREF1058_RS16710 at 612.011 kb on + strand, within HMPREF1058_RS16710 at 612.033 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.037 kb on + strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.038 kb on - strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.039 kb on + strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.040 kb on - strand, within HMPREF1058_RS16710 at 612.042 kb on + strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.043 kb on - strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.047 kb on + strand, within HMPREF1058_RS16710 at 612.048 kb on - strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.159 kb on + strand, within HMPREF1058_RS16710 at 612.192 kb on - strand, within HMPREF1058_RS16710 at 612.267 kb on + strand at 612.344 kb on - strand at 612.365 kb on - strand at 612.391 kb on + strand at 612.423 kb on - strand at 612.442 kb on - strand at 612.452 kb on + strand at 612.452 kb on + strand at 612.458 kb on - strand at 612.569 kb on + strand at 612.626 kb on - strand at 612.699 kb on + strand, within HMPREF1058_RS16705 at 612.817 kb on + strand, within HMPREF1058_RS16705 at 612.837 kb on + strand, within HMPREF1058_RS16705 at 612.918 kb on + strand, within HMPREF1058_RS16705 at 612.928 kb on + strand, within HMPREF1058_RS16705 at 612.931 kb on + strand, within HMPREF1058_RS16705 at 612.931 kb on + strand, within HMPREF1058_RS16705 at 612.944 kb on + strand, within HMPREF1058_RS16705 at 612.945 kb on - strand, within HMPREF1058_RS16705 at 612.951 kb on + strand, within HMPREF1058_RS16705 at 612.952 kb on - strand, within HMPREF1058_RS16705 at 612.952 kb on - strand, within HMPREF1058_RS16705 at 612.952 kb on - strand, within HMPREF1058_RS16705 at 613.195 kb on - strand at 613.195 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 5mg/ml (C) remove 610,975 + HMPREF1058_RS16720 0.31 +0.6 611,041 + HMPREF1058_RS16720 0.41 -0.0 611,041 + HMPREF1058_RS16720 0.41 +1.2 611,085 + HMPREF1058_RS16720 0.48 -0.3 611,285 - HMPREF1058_RS16720 0.80 -0.0 611,390 + -0.3 611,453 + +0.1 611,455 + +0.5 611,543 + HMPREF1058_RS16715 0.17 -0.7 611,652 - HMPREF1058_RS16715 0.61 -1.0 611,735 + -0.5 611,749 + -0.0 611,766 + +0.1 611,796 - -1.8 611,803 + -0.9 611,803 + +0.7 611,804 - -0.0 611,804 - -1.5 611,804 - -0.0 611,804 - -0.8 611,805 + +0.3 611,806 - -0.5 611,844 + +2.5 611,845 - -0.9 611,847 - +0.3 611,916 + -1.6 611,918 + -0.1 611,919 - -0.3 611,940 - -0.2 611,942 - +0.1 611,944 + -0.3 611,994 + HMPREF1058_RS16710 0.12 -1.5 612,011 + HMPREF1058_RS16710 0.17 -0.2 612,033 + HMPREF1058_RS16710 0.24 -1.0 612,037 + HMPREF1058_RS16710 0.25 -0.4 612,037 + HMPREF1058_RS16710 0.25 -2.2 612,037 + HMPREF1058_RS16710 0.25 -1.4 612,038 - HMPREF1058_RS16710 0.26 -1.2 612,038 - HMPREF1058_RS16710 0.26 +1.0 612,039 + HMPREF1058_RS16710 0.26 -0.1 612,039 + HMPREF1058_RS16710 0.26 -0.7 612,040 - HMPREF1058_RS16710 0.26 -0.1 612,040 - HMPREF1058_RS16710 0.26 +0.5 612,040 - HMPREF1058_RS16710 0.26 -0.8 612,040 - HMPREF1058_RS16710 0.26 -0.9 612,042 + HMPREF1058_RS16710 0.27 -1.2 612,043 - HMPREF1058_RS16710 0.27 +1.2 612,043 - HMPREF1058_RS16710 0.27 -1.5 612,047 + HMPREF1058_RS16710 0.28 -1.4 612,047 + HMPREF1058_RS16710 0.28 -1.0 612,048 - HMPREF1058_RS16710 0.29 -0.0 612,159 + HMPREF1058_RS16710 0.63 +0.2 612,159 + HMPREF1058_RS16710 0.63 -0.6 612,192 - HMPREF1058_RS16710 0.73 -1.5 612,267 + -0.3 612,344 - -0.7 612,365 - +0.2 612,391 + +2.1 612,423 - -1.0 612,442 - +0.1 612,452 + +1.0 612,452 + -0.3 612,458 - +0.8 612,569 + -0.3 612,626 - +1.3 612,699 + HMPREF1058_RS16705 0.11 -0.3 612,817 + HMPREF1058_RS16705 0.32 -0.4 612,837 + HMPREF1058_RS16705 0.36 -1.3 612,918 + HMPREF1058_RS16705 0.50 -0.2 612,928 + HMPREF1058_RS16705 0.52 +0.2 612,931 + HMPREF1058_RS16705 0.52 -0.7 612,931 + HMPREF1058_RS16705 0.52 -0.1 612,944 + HMPREF1058_RS16705 0.54 -0.7 612,945 - HMPREF1058_RS16705 0.55 +0.2 612,951 + HMPREF1058_RS16705 0.56 +0.7 612,952 - HMPREF1058_RS16705 0.56 +0.3 612,952 - HMPREF1058_RS16705 0.56 +0.2 612,952 - HMPREF1058_RS16705 0.56 -0.5 613,195 - -0.0 613,195 - +0.5
Or see this region's nucleotide sequence