Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16695

Experiment: Pectic galactan from potato 5mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16700 and HMPREF1058_RS16695 are separated by 102 nucleotidesHMPREF1058_RS16695 and HMPREF1058_RS16690 overlap by 4 nucleotides HMPREF1058_RS16700: HMPREF1058_RS16700 - purine permease, at 613,206 to 614,537 _RS16700 HMPREF1058_RS16695: HMPREF1058_RS16695 - phosphotransferase, at 614,640 to 616,070 _RS16695 HMPREF1058_RS16690: HMPREF1058_RS16690 - NTP transferase domain-containing protein, at 616,067 to 616,912 _RS16690 Position (kb) 614 615 616 617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 613.673 kb on - strand, within HMPREF1058_RS16700at 613.682 kb on + strand, within HMPREF1058_RS16700at 613.762 kb on + strand, within HMPREF1058_RS16700at 613.762 kb on + strand, within HMPREF1058_RS16700at 613.853 kb on - strand, within HMPREF1058_RS16700at 613.853 kb on - strand, within HMPREF1058_RS16700at 613.891 kb on + strand, within HMPREF1058_RS16700at 613.928 kb on + strand, within HMPREF1058_RS16700at 613.928 kb on + strand, within HMPREF1058_RS16700at 613.963 kb on + strand, within HMPREF1058_RS16700at 613.978 kb on + strand, within HMPREF1058_RS16700at 613.996 kb on + strand, within HMPREF1058_RS16700at 613.997 kb on - strand, within HMPREF1058_RS16700at 614.170 kb on + strand, within HMPREF1058_RS16700at 614.170 kb on + strand, within HMPREF1058_RS16700at 614.186 kb on - strand, within HMPREF1058_RS16700at 614.200 kb on + strand, within HMPREF1058_RS16700at 614.200 kb on + strand, within HMPREF1058_RS16700at 614.201 kb on - strand, within HMPREF1058_RS16700at 614.252 kb on - strand, within HMPREF1058_RS16700at 614.252 kb on - strand, within HMPREF1058_RS16700at 614.321 kb on - strand, within HMPREF1058_RS16700at 614.377 kb on + strand, within HMPREF1058_RS16700at 614.391 kb on - strand, within HMPREF1058_RS16700at 614.408 kb on - strandat 614.413 kb on + strandat 614.435 kb on - strandat 614.480 kb on + strandat 614.556 kb on + strandat 614.567 kb on + strandat 614.613 kb on + strandat 614.613 kb on + strandat 614.614 kb on - strandat 614.615 kb on + strandat 614.616 kb on - strandat 614.617 kb on + strandat 614.617 kb on + strandat 614.640 kb on - strandat 614.665 kb on + strandat 614.666 kb on - strandat 614.666 kb on - strandat 614.666 kb on - strandat 614.676 kb on + strandat 614.704 kb on + strandat 614.857 kb on + strand, within HMPREF1058_RS16695at 614.859 kb on + strand, within HMPREF1058_RS16695at 614.859 kb on + strand, within HMPREF1058_RS16695at 614.859 kb on + strand, within HMPREF1058_RS16695at 614.860 kb on - strand, within HMPREF1058_RS16695at 614.887 kb on - strand, within HMPREF1058_RS16695at 614.887 kb on - strand, within HMPREF1058_RS16695at 615.184 kb on + strand, within HMPREF1058_RS16695at 615.290 kb on + strand, within HMPREF1058_RS16695at 615.290 kb on + strand, within HMPREF1058_RS16695at 615.313 kb on + strand, within HMPREF1058_RS16695at 615.342 kb on - strand, within HMPREF1058_RS16695at 615.381 kb on + strand, within HMPREF1058_RS16695at 615.382 kb on - strand, within HMPREF1058_RS16695at 615.382 kb on - strand, within HMPREF1058_RS16695at 615.412 kb on + strand, within HMPREF1058_RS16695at 615.423 kb on + strand, within HMPREF1058_RS16695at 615.499 kb on - strand, within HMPREF1058_RS16695at 615.591 kb on + strand, within HMPREF1058_RS16695at 615.607 kb on + strand, within HMPREF1058_RS16695at 615.732 kb on + strand, within HMPREF1058_RS16695at 615.733 kb on - strand, within HMPREF1058_RS16695at 615.733 kb on - strand, within HMPREF1058_RS16695at 615.841 kb on + strand, within HMPREF1058_RS16695at 615.989 kb on + strandat 616.024 kb on + strandat 616.042 kb on + strandat 616.042 kb on + strandat 616.043 kb on - strandat 616.043 kb on - strandat 616.109 kb on - strandat 616.212 kb on + strand, within HMPREF1058_RS16690at 616.212 kb on + strand, within HMPREF1058_RS16690at 616.354 kb on - strand, within HMPREF1058_RS16690at 616.372 kb on + strand, within HMPREF1058_RS16690at 616.373 kb on - strand, within HMPREF1058_RS16690at 616.487 kb on + strand, within HMPREF1058_RS16690at 616.487 kb on + strand, within HMPREF1058_RS16690at 616.503 kb on + strand, within HMPREF1058_RS16690at 616.504 kb on - strand, within HMPREF1058_RS16690at 616.504 kb on - strand, within HMPREF1058_RS16690at 616.544 kb on + strand, within HMPREF1058_RS16690at 616.556 kb on - strand, within HMPREF1058_RS16690at 616.619 kb on - strand, within HMPREF1058_RS16690at 616.635 kb on + strand, within HMPREF1058_RS16690at 616.690 kb on + strand, within HMPREF1058_RS16690at 616.712 kb on + strand, within HMPREF1058_RS16690at 616.712 kb on + strand, within HMPREF1058_RS16690at 616.776 kb on - strand, within HMPREF1058_RS16690at 616.829 kb on + strandat 616.829 kb on + strandat 616.830 kb on - strandat 616.928 kb on + strandat 616.928 kb on + strandat 616.962 kb on - strandat 617.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pectic galactan from potato 5mg/ml (C)
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613,673 - HMPREF1058_RS16700 0.35 -0.9
613,682 + HMPREF1058_RS16700 0.36 -0.3
613,762 + HMPREF1058_RS16700 0.42 +0.3
613,762 + HMPREF1058_RS16700 0.42 +0.2
613,853 - HMPREF1058_RS16700 0.49 -2.0
613,853 - HMPREF1058_RS16700 0.49 +0.4
613,891 + HMPREF1058_RS16700 0.51 -2.5
613,928 + HMPREF1058_RS16700 0.54 +2.0
613,928 + HMPREF1058_RS16700 0.54 -0.2
613,963 + HMPREF1058_RS16700 0.57 -0.0
613,978 + HMPREF1058_RS16700 0.58 +0.1
613,996 + HMPREF1058_RS16700 0.59 -0.1
613,997 - HMPREF1058_RS16700 0.59 -0.0
614,170 + HMPREF1058_RS16700 0.72 -0.2
614,170 + HMPREF1058_RS16700 0.72 -0.5
614,186 - HMPREF1058_RS16700 0.74 -0.2
614,200 + HMPREF1058_RS16700 0.75 +0.0
614,200 + HMPREF1058_RS16700 0.75 +0.4
614,201 - HMPREF1058_RS16700 0.75 -0.1
614,252 - HMPREF1058_RS16700 0.79 +0.1
614,252 - HMPREF1058_RS16700 0.79 -0.9
614,321 - HMPREF1058_RS16700 0.84 -0.5
614,377 + HMPREF1058_RS16700 0.88 -0.3
614,391 - HMPREF1058_RS16700 0.89 -1.3
614,408 - +0.7
614,413 + -0.3
614,435 - +0.5
614,480 + -0.1
614,556 + +0.7
614,567 + -0.5
614,613 + +0.6
614,613 + +0.2
614,614 - -2.7
614,615 + -1.3
614,616 - -1.4
614,617 + +1.0
614,617 + -0.2
614,640 - -1.3
614,665 + -1.4
614,666 - -1.5
614,666 - -2.5
614,666 - +1.3
614,676 + -1.6
614,704 + -2.3
614,857 + HMPREF1058_RS16695 0.15 -0.4
614,859 + HMPREF1058_RS16695 0.15 -1.7
614,859 + HMPREF1058_RS16695 0.15 -1.0
614,859 + HMPREF1058_RS16695 0.15 -0.4
614,860 - HMPREF1058_RS16695 0.15 +0.9
614,887 - HMPREF1058_RS16695 0.17 -1.1
614,887 - HMPREF1058_RS16695 0.17 +2.1
615,184 + HMPREF1058_RS16695 0.38 +0.5
615,290 + HMPREF1058_RS16695 0.45 -2.0
615,290 + HMPREF1058_RS16695 0.45 -1.2
615,313 + HMPREF1058_RS16695 0.47 -0.9
615,342 - HMPREF1058_RS16695 0.49 +0.3
615,381 + HMPREF1058_RS16695 0.52 -1.4
615,382 - HMPREF1058_RS16695 0.52 -1.4
615,382 - HMPREF1058_RS16695 0.52 +0.3
615,412 + HMPREF1058_RS16695 0.54 -0.9
615,423 + HMPREF1058_RS16695 0.55 -1.1
615,499 - HMPREF1058_RS16695 0.60 -1.8
615,591 + HMPREF1058_RS16695 0.66 -1.8
615,607 + HMPREF1058_RS16695 0.68 -2.5
615,732 + HMPREF1058_RS16695 0.76 -2.5
615,733 - HMPREF1058_RS16695 0.76 -0.4
615,733 - HMPREF1058_RS16695 0.76 -1.1
615,841 + HMPREF1058_RS16695 0.84 -1.6
615,989 + -1.3
616,024 + -0.7
616,042 + -0.5
616,042 + -0.6
616,043 - -0.1
616,043 - -1.5
616,109 - -2.2
616,212 + HMPREF1058_RS16690 0.17 -1.8
616,212 + HMPREF1058_RS16690 0.17 -2.7
616,354 - HMPREF1058_RS16690 0.34 -3.8
616,372 + HMPREF1058_RS16690 0.36 -2.1
616,373 - HMPREF1058_RS16690 0.36 -1.7
616,487 + HMPREF1058_RS16690 0.50 -2.3
616,487 + HMPREF1058_RS16690 0.50 -3.1
616,503 + HMPREF1058_RS16690 0.52 -2.3
616,504 - HMPREF1058_RS16690 0.52 -3.6
616,504 - HMPREF1058_RS16690 0.52 -3.2
616,544 + HMPREF1058_RS16690 0.56 -2.2
616,556 - HMPREF1058_RS16690 0.58 -3.0
616,619 - HMPREF1058_RS16690 0.65 -1.4
616,635 + HMPREF1058_RS16690 0.67 -1.5
616,690 + HMPREF1058_RS16690 0.74 -1.6
616,712 + HMPREF1058_RS16690 0.76 -1.2
616,712 + HMPREF1058_RS16690 0.76 -3.2
616,776 - HMPREF1058_RS16690 0.84 -2.8
616,829 + -2.5
616,829 + -2.5
616,830 - +2.1
616,928 + +0.2
616,928 + +0.5
616,962 - -0.4
617,057 - +0.6

Or see this region's nucleotide sequence