Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04500

Experiment: Pectic galactan from potato 5mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectic galactan from potato 5mg/ml (C)
14,342	+		HMPREF1058_RS04505	0.21	-0.1
14,398	+		HMPREF1058_RS04505	0.27	-0.9
14,399	-		HMPREF1058_RS04505	0.27	-1.8
14,401	+		HMPREF1058_RS04505	0.27	-0.6
14,402	-		HMPREF1058_RS04505	0.27	-0.8
14,541	-		HMPREF1058_RS04505	0.40	-1.7
14,627	+		HMPREF1058_RS04505	0.48	+0.8
14,757	+		HMPREF1058_RS04505	0.60	+0.4
14,772	-		HMPREF1058_RS04505	0.61	-0.8
14,886	+		HMPREF1058_RS04505	0.71	+0.1
14,908	+		HMPREF1058_RS04505	0.73	+0.3
14,909	-		HMPREF1058_RS04505	0.74	+0.2
14,948	+		HMPREF1058_RS04505	0.77	-1.4
14,949	-		HMPREF1058_RS04505	0.77	+0.3
14,953	+		HMPREF1058_RS04505	0.78	-1.0
14,954	-		HMPREF1058_RS04505	0.78	+0.3
15,099	-				-1.2
15,099	-				+0.2
15,176	+				+0.2
15,202	+				+0.6
15,203	-				+0.9
15,289	-				-0.1
15,293	-				-1.5
15,434	+				-1.0
15,438	+		HMPREF1058_RS04500	0.10	-1.7
15,438	+		HMPREF1058_RS04500	0.10	+1.4
15,483	+		HMPREF1058_RS04500	0.13	-1.7
15,582	+		HMPREF1058_RS04500	0.20	-0.2
15,630	+		HMPREF1058_RS04500	0.23	+1.4
15,675	-		HMPREF1058_RS04500	0.26	+0.6
15,677	-		HMPREF1058_RS04500	0.26	-1.9
15,677	-		HMPREF1058_RS04500	0.26	-0.6
15,729	+		HMPREF1058_RS04500	0.29	-1.7
15,753	-		HMPREF1058_RS04500	0.31	+1.0
15,812	+		HMPREF1058_RS04500	0.35	-0.5
15,812	+		HMPREF1058_RS04500	0.35	+0.4
15,813	-		HMPREF1058_RS04500	0.35	+0.8
15,890	+		HMPREF1058_RS04500	0.40	-0.8
15,932	+		HMPREF1058_RS04500	0.43	-0.1
15,932	+		HMPREF1058_RS04500	0.43	+0.6
15,933	-		HMPREF1058_RS04500	0.43	-0.2
15,957	-		HMPREF1058_RS04500	0.45	+0.0
16,037	-		HMPREF1058_RS04500	0.50	-1.1
16,138	-		HMPREF1058_RS04500	0.57	-1.7
16,147	+		HMPREF1058_RS04500	0.57	-0.2
16,150	+		HMPREF1058_RS04500	0.58	+1.9
16,150	+		HMPREF1058_RS04500	0.58	+1.2
16,262	-		HMPREF1058_RS04500	0.65	-0.7
16,269	+		HMPREF1058_RS04500	0.65	+0.7
16,270	-		HMPREF1058_RS04500	0.66	+2.4
16,464	+		HMPREF1058_RS04500	0.78	+0.5
16,495	+		HMPREF1058_RS04500	0.81	+0.4
16,527	+		HMPREF1058_RS04500	0.83	+0.6
16,528	-		HMPREF1058_RS04500	0.83	+0.0
16,563	+		HMPREF1058_RS04500	0.85	+0.2
16,585	+		HMPREF1058_RS04500	0.87	+1.0
16,586	-		HMPREF1058_RS04500	0.87	-0.2
16,686	+				-0.6
16,774	+				-1.0
16,811	+				-1.0
16,826	-				-1.1
16,827	+				-0.6
16,831	+				-0.4
16,848	-				-0.8
16,935	-				+0.4
17,027	+		HMPREF1058_RS04495	0.11	+0.5
17,101	+		HMPREF1058_RS04495	0.17	-2.8
17,121	-		HMPREF1058_RS04495	0.19	+0.6
17,181	-		HMPREF1058_RS04495	0.24	+0.6
17,238	-		HMPREF1058_RS04495	0.28	-0.2
17,244	+		HMPREF1058_RS04495	0.29	+0.6
17,244	+		HMPREF1058_RS04495	0.29	-0.3
17,244	+		HMPREF1058_RS04495	0.29	-0.6
17,244	+		HMPREF1058_RS04495	0.29	-1.1
17,245	-		HMPREF1058_RS04495	0.29	-1.8
17,247	-		HMPREF1058_RS04495	0.29	-0.2
17,247	-		HMPREF1058_RS04495	0.29	+0.3
17,249	+		HMPREF1058_RS04495	0.29	-0.9
17,317	-		HMPREF1058_RS04495	0.35	+1.7
17,535	-		HMPREF1058_RS04495	0.52	-0.8
17,552	+		HMPREF1058_RS04495	0.54	+0.5
17,582	+		HMPREF1058_RS04495	0.56	+1.0
17,583	-		HMPREF1058_RS04495	0.56	-1.0
17,583	-		HMPREF1058_RS04495	0.56	-1.2
17,617	-		HMPREF1058_RS04495	0.59	-1.3
17,618	+		HMPREF1058_RS04495	0.59	-0.0
17,618	+		HMPREF1058_RS04495	0.59	+1.6
17,619	-		HMPREF1058_RS04495	0.59	-2.7
17,707	-		HMPREF1058_RS04495	0.66	+0.7
17,708	+		HMPREF1058_RS04495	0.66	+0.3
17,753	+		HMPREF1058_RS04495	0.70	-0.2
17,753	+		HMPREF1058_RS04495	0.70	+3.2