Experiment: Pectic galactan from potato 5mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02515 and HMPREF1058_RS02510 are separated by 64 nucleotides HMPREF1058_RS02510 and HMPREF1058_RS02505 are separated by 27 nucleotides HMPREF1058_RS02505 and HMPREF1058_RS02500 are separated by 79 nucleotides
HMPREF1058_RS02515: HMPREF1058_RS02515 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 165,457 to 166,674
_RS02515
HMPREF1058_RS02510: HMPREF1058_RS02510 - DUF2027 domain-containing protein, at 166,739 to 167,827
_RS02510
HMPREF1058_RS02505: HMPREF1058_RS02505 - PaaI family thioesterase, at 167,855 to 168,265
_RS02505
HMPREF1058_RS02500: HMPREF1058_RS02500 - histidine decarboxylase, at 168,345 to 168,953
_RS02500
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.739 kb on - strand, within HMPREF1058_RS02515 at 165.901 kb on - strand, within HMPREF1058_RS02515 at 165.921 kb on - strand, within HMPREF1058_RS02515 at 165.946 kb on + strand, within HMPREF1058_RS02515 at 166.201 kb on - strand, within HMPREF1058_RS02515 at 166.315 kb on - strand, within HMPREF1058_RS02515 at 166.342 kb on + strand, within HMPREF1058_RS02515 at 166.342 kb on + strand, within HMPREF1058_RS02515 at 166.391 kb on + strand, within HMPREF1058_RS02515 at 166.392 kb on - strand, within HMPREF1058_RS02515 at 166.392 kb on - strand, within HMPREF1058_RS02515 at 166.424 kb on - strand, within HMPREF1058_RS02515 at 166.492 kb on + strand, within HMPREF1058_RS02515 at 166.533 kb on + strand, within HMPREF1058_RS02515 at 166.746 kb on + strand at 166.753 kb on + strand at 166.753 kb on + strand at 166.754 kb on - strand at 166.754 kb on - strand at 166.895 kb on - strand, within HMPREF1058_RS02510 at 166.897 kb on + strand, within HMPREF1058_RS02510 at 166.897 kb on + strand, within HMPREF1058_RS02510 at 167.012 kb on + strand, within HMPREF1058_RS02510 at 167.087 kb on - strand, within HMPREF1058_RS02510 at 167.087 kb on - strand, within HMPREF1058_RS02510 at 167.111 kb on + strand, within HMPREF1058_RS02510 at 167.111 kb on + strand, within HMPREF1058_RS02510 at 167.141 kb on + strand, within HMPREF1058_RS02510 at 167.151 kb on - strand, within HMPREF1058_RS02510 at 167.167 kb on + strand, within HMPREF1058_RS02510 at 167.341 kb on - strand, within HMPREF1058_RS02510 at 167.344 kb on + strand, within HMPREF1058_RS02510 at 167.368 kb on + strand, within HMPREF1058_RS02510 at 167.368 kb on + strand, within HMPREF1058_RS02510 at 167.384 kb on - strand, within HMPREF1058_RS02510 at 167.411 kb on + strand, within HMPREF1058_RS02510 at 167.412 kb on - strand, within HMPREF1058_RS02510 at 167.418 kb on + strand, within HMPREF1058_RS02510 at 167.419 kb on - strand, within HMPREF1058_RS02510 at 167.469 kb on + strand, within HMPREF1058_RS02510 at 167.470 kb on - strand, within HMPREF1058_RS02510 at 167.747 kb on + strand at 167.748 kb on - strand at 167.748 kb on - strand at 167.755 kb on + strand at 167.792 kb on + strand at 167.819 kb on - strand at 167.842 kb on + strand at 167.844 kb on + strand at 167.897 kb on - strand, within HMPREF1058_RS02505 at 167.926 kb on - strand, within HMPREF1058_RS02505 at 167.988 kb on + strand, within HMPREF1058_RS02505 at 167.989 kb on - strand, within HMPREF1058_RS02505 at 167.989 kb on - strand, within HMPREF1058_RS02505 at 168.010 kb on + strand, within HMPREF1058_RS02505 at 168.011 kb on - strand, within HMPREF1058_RS02505 at 168.011 kb on - strand, within HMPREF1058_RS02505 at 168.085 kb on + strand, within HMPREF1058_RS02505 at 168.103 kb on + strand, within HMPREF1058_RS02505 at 168.120 kb on - strand at 168.120 kb on - strand, within HMPREF1058_RS02505 at 168.142 kb on + strand, within HMPREF1058_RS02505 at 168.207 kb on + strand, within HMPREF1058_RS02505 at 168.208 kb on - strand, within HMPREF1058_RS02505 at 168.208 kb on - strand, within HMPREF1058_RS02505 at 168.208 kb on - strand, within HMPREF1058_RS02505 at 168.211 kb on + strand, within HMPREF1058_RS02505 at 168.264 kb on - strand at 168.268 kb on + strand at 168.269 kb on - strand at 168.270 kb on + strand at 168.274 kb on - strand at 168.480 kb on - strand, within HMPREF1058_RS02500 at 168.480 kb on - strand, within HMPREF1058_RS02500 at 168.532 kb on + strand, within HMPREF1058_RS02500 at 168.532 kb on + strand, within HMPREF1058_RS02500 at 168.557 kb on + strand, within HMPREF1058_RS02500 at 168.618 kb on - strand, within HMPREF1058_RS02500 at 168.633 kb on + strand, within HMPREF1058_RS02500 at 168.724 kb on + strand, within HMPREF1058_RS02500 at 168.725 kb on - strand, within HMPREF1058_RS02500 at 168.725 kb on - strand, within HMPREF1058_RS02500 at 168.726 kb on + strand, within HMPREF1058_RS02500 at 168.726 kb on + strand, within HMPREF1058_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction Pectic galactan from potato 5mg/ml (C) remove 165,739 - HMPREF1058_RS02515 0.23 -1.3 165,901 - HMPREF1058_RS02515 0.36 -0.2 165,921 - HMPREF1058_RS02515 0.38 -0.4 165,946 + HMPREF1058_RS02515 0.40 -0.1 166,201 - HMPREF1058_RS02515 0.61 -1.0 166,315 - HMPREF1058_RS02515 0.70 -0.8 166,342 + HMPREF1058_RS02515 0.73 -1.5 166,342 + HMPREF1058_RS02515 0.73 -1.1 166,391 + HMPREF1058_RS02515 0.77 -1.9 166,392 - HMPREF1058_RS02515 0.77 +0.1 166,392 - HMPREF1058_RS02515 0.77 -0.4 166,424 - HMPREF1058_RS02515 0.79 -1.1 166,492 + HMPREF1058_RS02515 0.85 -1.1 166,533 + HMPREF1058_RS02515 0.88 -2.9 166,746 + +0.0 166,753 + +0.5 166,753 + +0.2 166,754 - +0.4 166,754 - -0.4 166,895 - HMPREF1058_RS02510 0.14 -2.1 166,897 + HMPREF1058_RS02510 0.15 +0.3 166,897 + HMPREF1058_RS02510 0.15 +1.7 167,012 + HMPREF1058_RS02510 0.25 +0.9 167,087 - HMPREF1058_RS02510 0.32 -0.8 167,087 - HMPREF1058_RS02510 0.32 -0.4 167,111 + HMPREF1058_RS02510 0.34 +0.1 167,111 + HMPREF1058_RS02510 0.34 -0.7 167,141 + HMPREF1058_RS02510 0.37 -0.3 167,151 - HMPREF1058_RS02510 0.38 +0.0 167,167 + HMPREF1058_RS02510 0.39 +0.1 167,341 - HMPREF1058_RS02510 0.55 -0.3 167,344 + HMPREF1058_RS02510 0.56 -0.5 167,368 + HMPREF1058_RS02510 0.58 -1.3 167,368 + HMPREF1058_RS02510 0.58 -0.2 167,384 - HMPREF1058_RS02510 0.59 +1.7 167,411 + HMPREF1058_RS02510 0.62 +1.5 167,412 - HMPREF1058_RS02510 0.62 -0.6 167,418 + HMPREF1058_RS02510 0.62 +0.8 167,419 - HMPREF1058_RS02510 0.62 -1.9 167,469 + HMPREF1058_RS02510 0.67 -1.0 167,470 - HMPREF1058_RS02510 0.67 +0.5 167,747 + +0.1 167,748 - -0.5 167,748 - +1.9 167,755 + -2.5 167,792 + -0.0 167,819 - +0.6 167,842 + +0.4 167,844 + -0.7 167,897 - HMPREF1058_RS02505 0.10 -2.1 167,926 - HMPREF1058_RS02505 0.17 +0.2 167,988 + HMPREF1058_RS02505 0.32 +0.2 167,989 - HMPREF1058_RS02505 0.33 +0.4 167,989 - HMPREF1058_RS02505 0.33 -0.8 168,010 + HMPREF1058_RS02505 0.38 +0.3 168,011 - HMPREF1058_RS02505 0.38 +0.4 168,011 - HMPREF1058_RS02505 0.38 -0.8 168,085 + HMPREF1058_RS02505 0.56 +0.1 168,103 + HMPREF1058_RS02505 0.60 +0.0 168,120 - +1.9 168,120 - HMPREF1058_RS02505 0.64 -0.3 168,142 + HMPREF1058_RS02505 0.70 -0.2 168,207 + HMPREF1058_RS02505 0.86 -1.3 168,208 - HMPREF1058_RS02505 0.86 -0.1 168,208 - HMPREF1058_RS02505 0.86 +0.3 168,208 - HMPREF1058_RS02505 0.86 -0.2 168,211 + HMPREF1058_RS02505 0.87 -0.7 168,264 - -1.5 168,268 + +0.1 168,269 - -0.1 168,270 + +0.2 168,274 - -0.4 168,480 - HMPREF1058_RS02500 0.22 +0.7 168,480 - HMPREF1058_RS02500 0.22 +0.4 168,532 + HMPREF1058_RS02500 0.31 +0.4 168,532 + HMPREF1058_RS02500 0.31 +0.1 168,557 + HMPREF1058_RS02500 0.35 +0.5 168,618 - HMPREF1058_RS02500 0.45 +1.6 168,633 + HMPREF1058_RS02500 0.47 -0.6 168,724 + HMPREF1058_RS02500 0.62 -0.3 168,725 - HMPREF1058_RS02500 0.62 +0.4 168,725 - HMPREF1058_RS02500 0.62 -0.6 168,726 + HMPREF1058_RS02500 0.63 -0.1 168,726 + HMPREF1058_RS02500 0.63 +0.9
Or see this region's nucleotide sequence