Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02118 and CCNA_02119 are separated by 4 nucleotides CCNA_02119 and CCNA_02120 overlap by 23 nucleotides CCNA_02120 and CCNA_02121 are separated by 142 nucleotides
CCNA_02118: CCNA_02118 - ATP-dependent helicase, dinG family, at 2,267,319 to 2,269,502
_02118
CCNA_02119: CCNA_02119 - hypothetical protein, at 2,269,507 to 2,270,220
_02119
CCNA_02120: CCNA_02120 - tetratricopeptide repeat family protein, at 2,270,198 to 2,271,166
_02120
CCNA_02121: CCNA_02121 - ATP-dependent helicase, at 2,271,309 to 2,273,888
_02121
Position (kb)
2270
2271
2272 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2269.256 kb on + strand, within CCNA_02118 at 2269.321 kb on - strand at 2269.321 kb on - strand at 2269.378 kb on - strand at 2269.484 kb on - strand at 2269.493 kb on - strand at 2269.527 kb on - strand at 2269.558 kb on + strand at 2269.582 kb on - strand, within CCNA_02119 at 2269.598 kb on + strand, within CCNA_02119 at 2269.634 kb on + strand, within CCNA_02119 at 2269.642 kb on + strand at 2269.650 kb on - strand, within CCNA_02119 at 2269.650 kb on - strand, within CCNA_02119 at 2269.688 kb on + strand, within CCNA_02119 at 2269.711 kb on + strand, within CCNA_02119 at 2269.729 kb on + strand, within CCNA_02119 at 2269.734 kb on + strand, within CCNA_02119 at 2269.747 kb on - strand, within CCNA_02119 at 2269.765 kb on - strand, within CCNA_02119 at 2269.765 kb on - strand, within CCNA_02119 at 2269.809 kb on + strand, within CCNA_02119 at 2269.810 kb on + strand, within CCNA_02119 at 2269.810 kb on + strand, within CCNA_02119 at 2269.810 kb on + strand, within CCNA_02119 at 2269.810 kb on + strand, within CCNA_02119 at 2269.817 kb on - strand, within CCNA_02119 at 2269.818 kb on - strand, within CCNA_02119 at 2269.818 kb on - strand, within CCNA_02119 at 2269.818 kb on - strand, within CCNA_02119 at 2269.855 kb on - strand, within CCNA_02119 at 2269.855 kb on - strand, within CCNA_02119 at 2269.866 kb on - strand, within CCNA_02119 at 2269.889 kb on + strand, within CCNA_02119 at 2269.890 kb on - strand, within CCNA_02119 at 2269.924 kb on + strand, within CCNA_02119 at 2269.985 kb on - strand, within CCNA_02119 at 2269.985 kb on - strand, within CCNA_02119 at 2270.112 kb on - strand, within CCNA_02119 at 2270.172 kb on - strand at 2270.196 kb on + strand at 2270.196 kb on + strand at 2270.196 kb on + strand at 2270.196 kb on + strand at 2270.197 kb on - strand at 2270.204 kb on - strand at 2270.204 kb on - strand at 2270.204 kb on - strand at 2270.204 kb on - strand at 2270.264 kb on + strand at 2270.329 kb on - strand, within CCNA_02120 at 2270.340 kb on - strand, within CCNA_02120 at 2270.349 kb on + strand, within CCNA_02120 at 2270.351 kb on + strand, within CCNA_02120 at 2270.368 kb on + strand, within CCNA_02120 at 2270.459 kb on + strand, within CCNA_02120 at 2270.459 kb on + strand, within CCNA_02120 at 2270.543 kb on - strand, within CCNA_02120 at 2270.545 kb on - strand, within CCNA_02120 at 2270.554 kb on + strand, within CCNA_02120 at 2270.609 kb on + strand, within CCNA_02120 at 2270.609 kb on + strand, within CCNA_02120 at 2270.617 kb on - strand, within CCNA_02120 at 2270.663 kb on + strand, within CCNA_02120 at 2270.686 kb on + strand, within CCNA_02120 at 2270.686 kb on + strand, within CCNA_02120 at 2270.717 kb on + strand, within CCNA_02120 at 2270.747 kb on + strand, within CCNA_02120 at 2270.747 kb on + strand, within CCNA_02120 at 2270.778 kb on - strand, within CCNA_02120 at 2270.783 kb on - strand, within CCNA_02120 at 2270.807 kb on - strand, within CCNA_02120 at 2270.822 kb on + strand, within CCNA_02120 at 2270.830 kb on - strand, within CCNA_02120 at 2270.846 kb on + strand, within CCNA_02120 at 2270.848 kb on + strand, within CCNA_02120 at 2270.865 kb on - strand, within CCNA_02120 at 2270.963 kb on - strand, within CCNA_02120 at 2271.032 kb on - strand, within CCNA_02120 at 2271.032 kb on - strand, within CCNA_02120 at 2271.100 kb on - strand at 2271.117 kb on + strand at 2271.117 kb on + strand at 2271.125 kb on - strand at 2271.125 kb on - strand at 2271.134 kb on + strand at 2271.169 kb on - strand at 2271.176 kb on - strand at 2271.182 kb on - strand at 2271.184 kb on - strand at 2271.185 kb on + strand at 2271.213 kb on - strand at 2271.219 kb on + strand at 2271.226 kb on + strand at 2271.248 kb on - strand at 2271.341 kb on - strand at 2271.344 kb on + strand at 2271.346 kb on - strand at 2271.393 kb on + strand at 2271.401 kb on - strand at 2271.412 kb on - strand at 2271.423 kb on + strand at 2271.431 kb on - strand at 2271.450 kb on + strand at 2271.450 kb on + strand at 2271.497 kb on + strand at 2271.504 kb on - strand at 2271.509 kb on + strand at 2271.526 kb on + strand at 2271.534 kb on - strand at 2271.534 kb on - strand at 2271.685 kb on + strand, within CCNA_02121 at 2271.685 kb on + strand, within CCNA_02121 at 2271.690 kb on + strand, within CCNA_02121 at 2271.703 kb on - strand, within CCNA_02121 at 2271.719 kb on + strand, within CCNA_02121 at 2271.719 kb on + strand, within CCNA_02121 at 2271.724 kb on + strand, within CCNA_02121 at 2271.727 kb on - strand, within CCNA_02121 at 2271.756 kb on + strand, within CCNA_02121 at 2271.761 kb on + strand, within CCNA_02121 at 2271.894 kb on - strand, within CCNA_02121 at 2271.921 kb on + strand, within CCNA_02121 at 2271.961 kb on - strand, within CCNA_02121 at 2271.989 kb on - strand, within CCNA_02121 at 2272.004 kb on - strand, within CCNA_02121 at 2272.009 kb on - strand, within CCNA_02121 at 2272.032 kb on - strand, within CCNA_02121 at 2272.049 kb on + strand, within CCNA_02121 at 2272.049 kb on + strand, within CCNA_02121 at 2272.062 kb on - strand, within CCNA_02121 at 2272.104 kb on - strand, within CCNA_02121 at 2272.124 kb on - strand, within CCNA_02121 at 2272.134 kb on + strand, within CCNA_02121 at 2272.142 kb on - strand, within CCNA_02121 at 2272.142 kb on - strand, within CCNA_02121 at 2272.147 kb on - strand, within CCNA_02121
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 2,269,256 + CCNA_02118 0.89 -0.9 2,269,321 - -0.8 2,269,321 - +1.2 2,269,378 - -0.1 2,269,484 - -1.7 2,269,493 - -1.8 2,269,527 - -0.7 2,269,558 + -0.8 2,269,582 - CCNA_02119 0.11 -0.3 2,269,598 + CCNA_02119 0.13 -0.4 2,269,634 + CCNA_02119 0.18 +0.7 2,269,642 + +0.9 2,269,650 - CCNA_02119 0.20 +0.5 2,269,650 - CCNA_02119 0.20 -0.6 2,269,688 + CCNA_02119 0.25 -2.0 2,269,711 + CCNA_02119 0.29 +1.5 2,269,729 + CCNA_02119 0.31 +0.5 2,269,734 + CCNA_02119 0.32 -0.7 2,269,747 - CCNA_02119 0.34 -0.4 2,269,765 - CCNA_02119 0.36 +0.4 2,269,765 - CCNA_02119 0.36 +0.7 2,269,809 + CCNA_02119 0.42 -0.3 2,269,810 + CCNA_02119 0.42 -0.8 2,269,810 + CCNA_02119 0.42 +0.2 2,269,810 + CCNA_02119 0.42 -0.7 2,269,810 + CCNA_02119 0.42 -0.5 2,269,817 - CCNA_02119 0.43 +0.3 2,269,818 - CCNA_02119 0.44 -0.0 2,269,818 - CCNA_02119 0.44 +0.5 2,269,818 - CCNA_02119 0.44 -0.7 2,269,855 - CCNA_02119 0.49 -0.1 2,269,855 - CCNA_02119 0.49 +0.3 2,269,866 - CCNA_02119 0.50 +0.8 2,269,889 + CCNA_02119 0.54 -1.2 2,269,890 - CCNA_02119 0.54 +1.3 2,269,924 + CCNA_02119 0.58 +0.5 2,269,985 - CCNA_02119 0.67 +0.8 2,269,985 - CCNA_02119 0.67 -1.2 2,270,112 - CCNA_02119 0.85 +1.7 2,270,172 - -0.1 2,270,196 + -2.1 2,270,196 + -2.5 2,270,196 + +2.2 2,270,196 + -0.3 2,270,197 - -0.2 2,270,204 - -2.3 2,270,204 - -1.1 2,270,204 - -0.6 2,270,204 - -0.4 2,270,264 + -0.3 2,270,329 - CCNA_02120 0.14 -0.8 2,270,340 - CCNA_02120 0.15 -0.3 2,270,349 + CCNA_02120 0.16 +0.2 2,270,351 + CCNA_02120 0.16 -1.1 2,270,368 + CCNA_02120 0.18 -0.4 2,270,459 + CCNA_02120 0.27 -1.1 2,270,459 + CCNA_02120 0.27 -1.1 2,270,543 - CCNA_02120 0.36 -1.4 2,270,545 - CCNA_02120 0.36 -2.0 2,270,554 + CCNA_02120 0.37 -2.4 2,270,609 + CCNA_02120 0.42 -2.7 2,270,609 + CCNA_02120 0.42 -0.1 2,270,617 - CCNA_02120 0.43 +0.8 2,270,663 + CCNA_02120 0.48 -2.3 2,270,686 + CCNA_02120 0.50 -1.5 2,270,686 + CCNA_02120 0.50 -0.5 2,270,717 + CCNA_02120 0.54 -2.6 2,270,747 + CCNA_02120 0.57 -0.8 2,270,747 + CCNA_02120 0.57 +0.9 2,270,778 - CCNA_02120 0.60 -1.9 2,270,783 - CCNA_02120 0.60 -2.0 2,270,807 - CCNA_02120 0.63 -1.4 2,270,822 + CCNA_02120 0.64 -1.9 2,270,830 - CCNA_02120 0.65 +0.4 2,270,846 + CCNA_02120 0.67 -2.8 2,270,848 + CCNA_02120 0.67 -0.7 2,270,865 - CCNA_02120 0.69 +2.4 2,270,963 - CCNA_02120 0.79 -1.8 2,271,032 - CCNA_02120 0.86 -0.4 2,271,032 - CCNA_02120 0.86 -1.8 2,271,100 - -2.7 2,271,117 + -0.1 2,271,117 + -0.5 2,271,125 - -0.7 2,271,125 - -2.3 2,271,134 + -0.1 2,271,169 - -3.8 2,271,176 - -1.5 2,271,182 - -0.5 2,271,184 - -0.9 2,271,185 + -2.5 2,271,213 - +0.4 2,271,219 + +0.5 2,271,226 + +0.9 2,271,248 - -1.2 2,271,341 - -1.2 2,271,344 + +0.1 2,271,346 - -1.4 2,271,393 + +0.6 2,271,401 - -1.5 2,271,412 - +0.1 2,271,423 + -0.3 2,271,431 - -1.2 2,271,450 + -1.3 2,271,450 + -2.5 2,271,497 + -0.8 2,271,504 - +1.3 2,271,509 + -0.8 2,271,526 + -2.0 2,271,534 - -1.3 2,271,534 - +0.5 2,271,685 + CCNA_02121 0.15 -2.2 2,271,685 + CCNA_02121 0.15 -0.8 2,271,690 + CCNA_02121 0.15 -0.7 2,271,703 - CCNA_02121 0.15 -1.2 2,271,719 + CCNA_02121 0.16 -1.4 2,271,719 + CCNA_02121 0.16 -2.6 2,271,724 + CCNA_02121 0.16 -1.5 2,271,727 - CCNA_02121 0.16 -0.1 2,271,756 + CCNA_02121 0.17 -0.3 2,271,761 + CCNA_02121 0.18 -0.2 2,271,894 - CCNA_02121 0.23 -0.4 2,271,921 + CCNA_02121 0.24 -0.7 2,271,961 - CCNA_02121 0.25 -0.8 2,271,989 - CCNA_02121 0.26 -1.1 2,272,004 - CCNA_02121 0.27 -0.6 2,272,009 - CCNA_02121 0.27 -0.4 2,272,032 - CCNA_02121 0.28 -0.8 2,272,049 + CCNA_02121 0.29 -1.5 2,272,049 + CCNA_02121 0.29 +0.6 2,272,062 - CCNA_02121 0.29 +0.3 2,272,104 - CCNA_02121 0.31 -0.7 2,272,124 - CCNA_02121 0.32 -0.7 2,272,134 + CCNA_02121 0.32 -1.6 2,272,142 - CCNA_02121 0.32 -0.2 2,272,142 - CCNA_02121 0.32 -0.3 2,272,147 - CCNA_02121 0.32 +1.5
Or see this region's nucleotide sequence