Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01765

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01763 and CCNA_01764 are separated by 120 nucleotidesCCNA_01764 and CCNA_01765 overlap by 4 nucleotidesCCNA_01765 and CCNA_01766 are separated by 42 nucleotides CCNA_01763: CCNA_01763 - multifunctional aminopeptidase, at 1,891,999 to 1,893,480 _01763 CCNA_01764: CCNA_01764 - DNA polymerase III, chi subunit, at 1,893,601 to 1,894,062 _01764 CCNA_01765: CCNA_01765 - peptidase inhibitor, I78 family, at 1,894,059 to 1,894,400 _01765 CCNA_01766: CCNA_01766 - CsgG-related curli protein, at 1,894,443 to 1,895,228 _01766 Position (kb) 1894 1895Strain fitness (log2 ratio) -2 -1 0 1 2at 1893.086 kb on + strand, within CCNA_01763at 1893.089 kb on - strand, within CCNA_01763at 1893.089 kb on - strand, within CCNA_01763at 1893.108 kb on - strand, within CCNA_01763at 1893.117 kb on - strand, within CCNA_01763at 1893.211 kb on + strand, within CCNA_01763at 1893.325 kb on + strand, within CCNA_01763at 1893.366 kb on - strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.434 kb on - strandat 1893.436 kb on - strandat 1893.479 kb on + strandat 1893.487 kb on - strandat 1893.530 kb on - strandat 1893.540 kb on - strandat 1893.556 kb on + strandat 1893.575 kb on - strandat 1893.575 kb on - strandat 1893.620 kb on - strandat 1894.056 kb on + strandat 1894.056 kb on + strandat 1894.103 kb on - strand, within CCNA_01765at 1894.112 kb on - strand, within CCNA_01765at 1894.199 kb on - strand, within CCNA_01765at 1894.241 kb on - strand, within CCNA_01765at 1894.250 kb on + strand, within CCNA_01765at 1894.255 kb on + strand, within CCNA_01765at 1894.282 kb on - strand, within CCNA_01765at 1894.321 kb on + strand, within CCNA_01765at 1894.343 kb on + strand, within CCNA_01765at 1894.363 kb on - strand, within CCNA_01765at 1894.374 kb on - strandat 1894.385 kb on + strandat 1894.393 kb on - strandat 1894.464 kb on + strandat 1894.542 kb on + strand, within CCNA_01766at 1894.550 kb on - strand, within CCNA_01766at 1894.573 kb on + strand, within CCNA_01766at 1894.575 kb on + strand, within CCNA_01766at 1894.586 kb on + strand, within CCNA_01766at 1894.594 kb on - strand, within CCNA_01766at 1894.595 kb on + strand, within CCNA_01766at 1894.619 kb on - strand, within CCNA_01766at 1894.643 kb on + strand, within CCNA_01766at 1894.651 kb on - strand, within CCNA_01766at 1894.651 kb on - strand, within CCNA_01766at 1894.658 kb on - strand, within CCNA_01766at 1894.658 kb on - strand, within CCNA_01766at 1894.759 kb on - strand, within CCNA_01766at 1894.865 kb on - strand, within CCNA_01766at 1894.872 kb on + strand, within CCNA_01766at 1894.881 kb on + strand, within CCNA_01766at 1894.896 kb on + strand, within CCNA_01766at 1894.902 kb on - strand, within CCNA_01766at 1894.904 kb on + strand, within CCNA_01766at 1894.922 kb on - strand, within CCNA_01766at 1894.923 kb on + strand, within CCNA_01766at 1894.923 kb on + strand, within CCNA_01766at 1894.941 kb on - strand, within CCNA_01766at 1895.008 kb on - strand, within CCNA_01766at 1895.021 kb on + strand, within CCNA_01766at 1895.029 kb on - strand, within CCNA_01766at 1895.149 kb on + strand, within CCNA_01766at 1895.157 kb on - strandat 1895.166 kb on + strandat 1895.303 kb on - strandat 1895.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,893,086 + CCNA_01763 0.73 -0.8
1,893,089 - CCNA_01763 0.74 -1.5
1,893,089 - CCNA_01763 0.74 -0.8
1,893,108 - CCNA_01763 0.75 -2.0
1,893,117 - CCNA_01763 0.75 -0.9
1,893,211 + CCNA_01763 0.82 -1.8
1,893,325 + CCNA_01763 0.89 -1.7
1,893,366 - -0.4
1,893,426 + -0.6
1,893,426 + -1.5
1,893,426 + -1.4
1,893,434 - +0.6
1,893,436 - -0.3
1,893,479 + +2.7
1,893,487 - -0.0
1,893,530 - +1.1
1,893,540 - +2.6
1,893,556 + +1.2
1,893,575 - +1.3
1,893,575 - +1.1
1,893,620 - +0.6
1,894,056 + +0.8
1,894,056 + +1.2
1,894,103 - CCNA_01765 0.13 +1.4
1,894,112 - CCNA_01765 0.15 +1.1
1,894,199 - CCNA_01765 0.41 +1.2
1,894,241 - CCNA_01765 0.53 +2.7
1,894,250 + CCNA_01765 0.56 +1.9
1,894,255 + CCNA_01765 0.57 +1.6
1,894,282 - CCNA_01765 0.65 +1.9
1,894,321 + CCNA_01765 0.77 +2.5
1,894,343 + CCNA_01765 0.83 +0.9
1,894,363 - CCNA_01765 0.89 +0.8
1,894,374 - +2.7
1,894,385 + +1.5
1,894,393 - +1.3
1,894,464 + -0.0
1,894,542 + CCNA_01766 0.13 -0.0
1,894,550 - CCNA_01766 0.14 +1.1
1,894,573 + CCNA_01766 0.17 -1.0
1,894,575 + CCNA_01766 0.17 +2.3
1,894,586 + CCNA_01766 0.18 -1.4
1,894,594 - CCNA_01766 0.19 +0.9
1,894,595 + CCNA_01766 0.19 -0.5
1,894,619 - CCNA_01766 0.22 +1.8
1,894,643 + CCNA_01766 0.25 -0.0
1,894,651 - CCNA_01766 0.26 +1.1
1,894,651 - CCNA_01766 0.26 +1.7
1,894,658 - CCNA_01766 0.27 +1.3
1,894,658 - CCNA_01766 0.27 +1.6
1,894,759 - CCNA_01766 0.40 +0.5
1,894,865 - CCNA_01766 0.54 +1.0
1,894,872 + CCNA_01766 0.55 +0.7
1,894,881 + CCNA_01766 0.56 +1.7
1,894,896 + CCNA_01766 0.58 +1.5
1,894,902 - CCNA_01766 0.58 +1.7
1,894,904 + CCNA_01766 0.59 +0.4
1,894,922 - CCNA_01766 0.61 +2.3
1,894,923 + CCNA_01766 0.61 +0.1
1,894,923 + CCNA_01766 0.61 -1.6
1,894,941 - CCNA_01766 0.63 +0.6
1,895,008 - CCNA_01766 0.72 -0.2
1,895,021 + CCNA_01766 0.74 -2.2
1,895,029 - CCNA_01766 0.75 -0.7
1,895,149 + CCNA_01766 0.90 -1.5
1,895,157 - +0.1
1,895,166 + -0.6
1,895,303 - -0.4
1,895,305 + -0.4

Or see this region's nucleotide sequence