Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00895 and CCNA_00896 are separated by 7 nucleotides CCNA_00896 and CCNA_00897 are separated by 92 nucleotides CCNA_00897 and CCNA_00898 are separated by 75 nucleotides CCNA_00898 and CCNA_00899 are separated by 3 nucleotides
CCNA_00895: CCNA_00895 - hypothetical protein, at 975,146 to 975,541
_00895
CCNA_00896: CCNA_00896 - hypothetical protein, at 975,549 to 975,920
_00896
CCNA_00897: CCNA_00897 - hypothetical protein, at 976,013 to 976,177
_00897
CCNA_00898: CCNA_00898 - ribosomal large subunit pseudouridine synthase F, at 976,253 to 977,020
_00898
CCNA_00899: CCNA_00899 - bacterial peptide chain Release factor 1 (RF-1), at 977,024 to 978,094
_00899
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 975.271 kb on + strand, within CCNA_00895 at 975.326 kb on + strand, within CCNA_00895 at 975.453 kb on + strand, within CCNA_00895 at 975.453 kb on + strand, within CCNA_00895 at 975.501 kb on + strand, within CCNA_00895 at 975.501 kb on + strand, within CCNA_00895 at 975.535 kb on + strand at 975.540 kb on + strand at 975.553 kb on + strand at 975.558 kb on + strand at 975.566 kb on - strand at 975.653 kb on + strand, within CCNA_00896 at 975.672 kb on - strand, within CCNA_00896 at 975.710 kb on + strand, within CCNA_00896 at 975.733 kb on - strand, within CCNA_00896 at 975.805 kb on - strand, within CCNA_00896 at 975.827 kb on - strand, within CCNA_00896 at 975.828 kb on - strand, within CCNA_00896 at 975.888 kb on + strand at 975.888 kb on + strand at 975.902 kb on + strand at 976.051 kb on - strand, within CCNA_00897 at 976.098 kb on + strand, within CCNA_00897 at 976.106 kb on - strand, within CCNA_00897 at 976.145 kb on - strand, within CCNA_00897 at 976.152 kb on - strand, within CCNA_00897 at 976.168 kb on + strand at 976.181 kb on - strand at 976.191 kb on - strand at 976.195 kb on - strand at 976.234 kb on + strand at 976.234 kb on + strand at 976.240 kb on + strand at 976.242 kb on - strand at 976.242 kb on - strand at 976.275 kb on - strand at 976.324 kb on + strand at 976.324 kb on + strand at 976.324 kb on + strand at 976.332 kb on - strand, within CCNA_00898 at 976.332 kb on - strand, within CCNA_00898 at 976.332 kb on - strand, within CCNA_00898 at 976.332 kb on - strand, within CCNA_00898 at 976.332 kb on - strand, within CCNA_00898 at 976.333 kb on - strand, within CCNA_00898 at 976.357 kb on - strand, within CCNA_00898 at 976.362 kb on + strand, within CCNA_00898 at 976.362 kb on + strand, within CCNA_00898 at 976.404 kb on - strand, within CCNA_00898 at 976.415 kb on + strand, within CCNA_00898 at 976.420 kb on + strand, within CCNA_00898 at 976.420 kb on + strand, within CCNA_00898 at 976.420 kb on + strand, within CCNA_00898 at 976.428 kb on - strand, within CCNA_00898 at 976.428 kb on - strand, within CCNA_00898 at 976.428 kb on - strand, within CCNA_00898 at 976.446 kb on - strand, within CCNA_00898 at 976.449 kb on + strand, within CCNA_00898 at 976.451 kb on - strand, within CCNA_00898 at 976.479 kb on - strand, within CCNA_00898 at 976.481 kb on + strand, within CCNA_00898 at 976.500 kb on - strand, within CCNA_00898 at 976.712 kb on - strand, within CCNA_00898 at 976.745 kb on - strand, within CCNA_00898 at 976.760 kb on - strand, within CCNA_00898 at 976.799 kb on + strand, within CCNA_00898 at 976.807 kb on - strand, within CCNA_00898 at 976.807 kb on - strand, within CCNA_00898 at 976.807 kb on - strand, within CCNA_00898 at 976.809 kb on + strand, within CCNA_00898 at 976.817 kb on - strand, within CCNA_00898 at 976.817 kb on - strand, within CCNA_00898 at 976.824 kb on - strand, within CCNA_00898 at 976.840 kb on + strand, within CCNA_00898 at 976.840 kb on + strand, within CCNA_00898 at 976.840 kb on + strand, within CCNA_00898 at 976.847 kb on + strand, within CCNA_00898 at 976.847 kb on + strand, within CCNA_00898 at 976.855 kb on - strand, within CCNA_00898 at 976.888 kb on - strand, within CCNA_00898 at 976.950 kb on + strand at 976.955 kb on + strand at 976.955 kb on + strand at 976.963 kb on - strand at 977.004 kb on - strand at 977.004 kb on - strand at 977.004 kb on - strand at 977.012 kb on - strand at 977.026 kb on + strand at 977.038 kb on + strand at 977.038 kb on + strand at 977.043 kb on + strand at 977.046 kb on - strand at 977.046 kb on - strand at 977.046 kb on - strand at 977.056 kb on - strand at 977.069 kb on - strand at 977.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 975,271 + CCNA_00895 0.32 +2.1 975,326 + CCNA_00895 0.45 +1.7 975,453 + CCNA_00895 0.78 +2.3 975,453 + CCNA_00895 0.78 +1.8 975,501 + CCNA_00895 0.90 +1.8 975,501 + CCNA_00895 0.90 +2.1 975,535 + +1.2 975,540 + +1.2 975,553 + +1.7 975,558 + -0.4 975,566 - +0.3 975,653 + CCNA_00896 0.28 +2.0 975,672 - CCNA_00896 0.33 -1.6 975,710 + CCNA_00896 0.43 +0.9 975,733 - CCNA_00896 0.49 +2.1 975,805 - CCNA_00896 0.69 -0.8 975,827 - CCNA_00896 0.75 +1.2 975,828 - CCNA_00896 0.75 -0.2 975,888 + +1.0 975,888 + +2.0 975,902 + +1.1 976,051 - CCNA_00897 0.23 -0.0 976,098 + CCNA_00897 0.52 -1.1 976,106 - CCNA_00897 0.56 +0.1 976,145 - CCNA_00897 0.80 +1.1 976,152 - CCNA_00897 0.84 -0.5 976,168 + -1.6 976,181 - +1.2 976,191 - +0.0 976,195 - +0.4 976,234 + -0.5 976,234 + -0.0 976,240 + -0.1 976,242 - +1.1 976,242 - +0.2 976,275 - +0.7 976,324 + -2.2 976,324 + -2.1 976,324 + -1.2 976,332 - CCNA_00898 0.10 +1.3 976,332 - CCNA_00898 0.10 +1.4 976,332 - CCNA_00898 0.10 +1.1 976,332 - CCNA_00898 0.10 +1.0 976,332 - CCNA_00898 0.10 +1.7 976,333 - CCNA_00898 0.10 +1.8 976,357 - CCNA_00898 0.14 +0.8 976,362 + CCNA_00898 0.14 +0.5 976,362 + CCNA_00898 0.14 -0.5 976,404 - CCNA_00898 0.20 +1.2 976,415 + CCNA_00898 0.21 -0.3 976,420 + CCNA_00898 0.22 -2.1 976,420 + CCNA_00898 0.22 -2.1 976,420 + CCNA_00898 0.22 +0.4 976,428 - CCNA_00898 0.23 +1.6 976,428 - CCNA_00898 0.23 +1.9 976,428 - CCNA_00898 0.23 +0.8 976,446 - CCNA_00898 0.25 +2.2 976,449 + CCNA_00898 0.26 -1.1 976,451 - CCNA_00898 0.26 +1.4 976,479 - CCNA_00898 0.29 +2.9 976,481 + CCNA_00898 0.30 +1.1 976,500 - CCNA_00898 0.32 +1.7 976,712 - CCNA_00898 0.60 +1.6 976,745 - CCNA_00898 0.64 +1.4 976,760 - CCNA_00898 0.66 +1.6 976,799 + CCNA_00898 0.71 -0.2 976,807 - CCNA_00898 0.72 +2.0 976,807 - CCNA_00898 0.72 +2.4 976,807 - CCNA_00898 0.72 +1.6 976,809 + CCNA_00898 0.72 +0.7 976,817 - CCNA_00898 0.73 +1.3 976,817 - CCNA_00898 0.73 +1.7 976,824 - CCNA_00898 0.74 +0.8 976,840 + CCNA_00898 0.76 -0.9 976,840 + CCNA_00898 0.76 +0.1 976,840 + CCNA_00898 0.76 -0.1 976,847 + CCNA_00898 0.77 +1.2 976,847 + CCNA_00898 0.77 +0.9 976,855 - CCNA_00898 0.78 +1.1 976,888 - CCNA_00898 0.83 +1.9 976,950 + -0.8 976,955 + -1.2 976,955 + -0.2 976,963 - +2.1 977,004 - +0.8 977,004 - +0.5 977,004 - +1.2 977,012 - +1.6 977,026 + -0.6 977,038 + +0.7 977,038 + +0.1 977,043 + -1.5 977,046 - +1.6 977,046 - +1.2 977,046 - +1.3 977,056 - +1.2 977,069 - +1.0 977,069 - +1.1
Or see this region's nucleotide sequence